Pairwise Alignments

Query, 220 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (289), Expect = 5e-31
 Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 3/214 (1%)

Query: 5   FDFGAVLSEWPLLLRGVAWTIGLTAVGTVLGMIVGTFCAWARANGPAWLRIVVGTYVELI 64
           FDF  +L   P+LL+ +  T+ + + G V  +I+  F A  R      L  +   Y+   
Sbjct: 3   FDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFF 62

Query: 65  RNTPFIVQLFFIFFGLPAAG---VKLSPEVASVIAMVLNLGAYSTEIIRAGIEATPKGQI 121
           R TP +VQLF +++GLP      V L    A+VI + L+  AY  E IRA I    + Q+
Sbjct: 63  RGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQM 122

Query: 122 EAAVSLALSKSQVFLRVVLPPALKKVWPAMVSQIVIVMLGSAVCGQISTEELSYAANLIQ 181
           EA++S+ ++ SQ   R++LP A +   P++++  + ++  +++   +   E+   A +  
Sbjct: 123 EASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQMEA 182

Query: 182 SRNFRAFEAFIVATLIYLALSVALRRLLDWAGPK 215
           S +FR FEAF+   LIY  + + L RL  WA  K
Sbjct: 183 SSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQK 216