Pairwise Alignments

Query, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 296 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  150 bits (380), Expect = 3e-41
 Identities = 96/293 (32%), Positives = 154/293 (52%), Gaps = 12/293 (4%)

Query: 3   LTGWAELLAGGLITGGIYALVAIGLNLQYGLMRIMNISHGEFLMLGAFATWWAHTALGIS 62
           L+  A+L   GL TG + AL A GL L YG++R+ N + GEFL LGA+ T  A++ LG+S
Sbjct: 12  LSQLAQLAINGLATGSLLALAATGLTLIYGILRLTNFAQGEFLTLGAYFTLVANS-LGLS 70

Query: 63  PLLFMP---VAFALLMALGMTVHWLCFRQVAARAPNVDVFEARSLMVGFGLMFLVQNTAL 119
             L +P   +A   L  LG  V W   R+       +       +++  GL   ++N  +
Sbjct: 71  LWLAIPLGAIATIALCLLGEAVLWEPLRRQRVNTTTL-------IILTIGLSLFLRNLVI 123

Query: 120 LVWGGDLRGYDYLADP-VQVGEMRFTANKLVLFGVALALSLLLIALLKLTLLGKAVRALM 178
           L+WG   + Y     P + +  +R T N L++   A A  +LL  +L+ T +GK +RA+ 
Sbjct: 124 LIWGAGNQAYRLAVQPALTLWGLRITLNSLLVVIGAAAALVLLHWVLQRTSIGKGMRAIA 183

Query: 179 QSPTGAQLVGINTKRLHPLMFGIGLGLSGVAGALLSMTYEISPSMGEPYTVTALIVITLG 238
             P  A++ G+  + +    + I  GL+ +AG L  +   + P+MG    +       LG
Sbjct: 184 DDPDLARVSGVPVETVIRWTWVIAGGLTAIAGGLYGLITAVRPTMGWNLILPLFASAILG 243

Query: 239 GFGSIAGSLVGGLLLGVVEALGMYYTSPSLKMLLSYAVFIGVLIWRPNGLFSR 291
           G GS  G++ GGL+LG  + L  Y+     K+ +++ + IGVL+ RP GLF+R
Sbjct: 244 GIGSPYGAIAGGLILGFAQELSTYWLPAEYKLAVAFVILIGVLVIRPQGLFAR 296