Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 4   ERYLSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSA-QAWLTTVM 62
           ER ++  P LR    R A  + G    A+D+VQ    RAL +A++  P +   AW+  ++
Sbjct: 10  ERLMAFLPNLR----RFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRIL 65

Query: 63  QNLAVDRLRRDR--WMQWWLKDAEGLSPQAPSAETEAAQAQEADHALRLLAERLSR---T 117
           +NL +D++RR +   +Q  + +   ++  +   ETEA         L+ +AE ++     
Sbjct: 66  RNLWIDQVRRQKTAGVQDDITERHDIAGSSGERETEARL------TLKTVAEAITELPDE 119

Query: 118 DAAAVLLREVFELSYSEIAKVSGKTEAGCRQQLHRALMRLRGREAPSSGRTQ 169
               VLL  V ELSY E A V G        +    LMR R   A ++G TQ
Sbjct: 120 QREVVLLVCVEELSYREAADVMGIPIGTVMSR----LMRARRSLAEAAGITQ 167