Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 285 a.a., RNA polymerase sigma factor SigJ from Sinorhizobium meliloti 1021

 Score = 82.4 bits (202), Expect = 9e-21
 Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 8   SQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQAWLTTVMQNLAV 67
           + F  LR +L+R A RMLG  ADAED+VQ+ ++R +  AD+      +A+L   +  L +
Sbjct: 11  ASFDPLRPKLMRVAYRMLGSVADAEDMVQEAFIRWM-GADRAEVREPEAFLRRTVTRLCL 69

Query: 68  DRLRRDRWMQWWLKDAEGLSPQAPSAETEAAQAQEADHALRLLAERLSRTDAAAVLLREV 127
           D+L+  R  +        + P  P    E  + ++    L L  ERLS  + AA LL +V
Sbjct: 70  DQLKSARRQR-----ETYVGPWLPDPVVEEEEVEDVTLPLMLALERLSPLERAAFLLHDV 124

Query: 128 FELSYSEIAKVSGKTEAGCRQQLHRALMRLRGREAPSSGRTQDDPETEAALQLYRQSLLN 187
           F L + E+A    +  A CRQ   RA  R   REA      + +   E A   ++ S  +
Sbjct: 125 FGLGFEEVAATIQRDAAACRQLAARA--RTHVREARPRFHVEKERGLELAEAFFKAS-RS 181

Query: 188 RDANVLLAML 197
            D N   AML
Sbjct: 182 GDMNAFGAML 191