Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 166 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score = 55.8 bits (133), Expect = 5e-13
 Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 22/169 (13%)

Query: 7   LSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSA-QAWLTTVMQNL 65
           L++ P LR    R A  ++G  A A+D+VQDT  RA         D   + WL ++M NL
Sbjct: 7   LAEIPRLR----RYARALVGDRAAADDLVQDTLERAWSRRRSWQDDRPLRPWLFSIMHNL 62

Query: 66  AVDRLRRDRWMQWWLKDAEGLSPQA-----PSAETEAAQAQEADHA-LRLLAERLSRTDA 119
            +D+LRR            G++PQ      P   T   Q+   + A L     RL     
Sbjct: 63  RLDQLRRP-----------GIAPQPLDERIPEPGTRPTQSDALELADLAAALYRLPEEQR 111

Query: 120 AAVLLREVFELSYSEIAKVSGKTEAGCRQQLHRALMRLRGREAPSSGRT 168
           A +LL  + ++SY  IA+           +L R    LR   AP SG T
Sbjct: 112 AVILLVALEDMSYDAIAQTLAIPRGTVMSRLFRGREHLRRLMAPESGVT 160