Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

 Score = 48.9 bits (115), Expect = 7e-11
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 11/96 (11%)

Query: 16  RLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQ--AWLTTVMQNLAVDRLRRD 73
           R++  A RML    +AEDV Q+T+LRA + A    P  A+   WL  V  NL  DRLRR 
Sbjct: 34  RILALARRMLNDAGEAEDVAQETFLRAWKQARSWKPGGARFDTWLHRVALNLCYDRLRRR 93

Query: 74  RWMQWWLKDA------EGLSPQAPSAETEAAQAQEA 103
           R +   + DA       G +P A   ++E ++  EA
Sbjct: 94  REV---VTDAPPEQIDPGPAPDAGLMQSELSRRVEA 126