Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas stutzeri RCH2

 Score =  494 bits (1272), Expect = e-144
 Identities = 276/558 (49%), Positives = 364/558 (65%), Gaps = 22/558 (3%)

Query: 23  PLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVADYDCD 82
           PLL RL+AARGV   +ELD GLARL+    L+G   A  LL +A+ + +R+  V D+D D
Sbjct: 20  PLLQRLYAARGVTCAEELDKGLARLIPYKQLKGIDAAVELLVEALEKRQRILFVGDFDAD 79

Query: 83  GATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNGIASV 142
           GATA  VGV GLR LGA +V YLVP+R   GYGLTP I         D+L+TVDNGI+SV
Sbjct: 80  GATASTVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPDLLVTVDNGISSV 139

Query: 143 EGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVLLALR 202
           +GVAAAKA GL+VLVTDHHLPG ELP AD +VNPNQP C F SK IAGVGV+FYVLLALR
Sbjct: 140 DGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPECAFPSKCIAGVGVIFYVLLALR 199

Query: 203 SELRKRGVF--DTATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGAMPAG 260
           + LR+   F      +P L  LL LVALG+VADVV LDANNR LV QGL RIRAG   AG
Sbjct: 200 ARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIRAGRARAG 259

Query: 261 VAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELARMLD 320
           + A+ + A R     T+ D GF LGPR+NAAGRL DM+LGIECLL +D   A ++A  LD
Sbjct: 260 LRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALARDMAVQLD 319

Query: 321 GINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIVASRI 380
            +N++R+ IE GM+ +AL   + L         +   P  + +F+A +H+GV+GI+ASR+
Sbjct: 320 ELNKDRKSIEQGMQREALAQLKDL--------PLEDLPFGLCLFEADWHQGVIGILASRL 371

Query: 381 KDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAMAA 440
           K+R+HRPT  FA +G    +  LKGS RS+PGFH+RDALD VA +HPG++ +FGGHAMAA
Sbjct: 372 KERYHRPTIAFADAG----DGLLKGSARSVPGFHIRDALDAVAAKHPGLISKFGGHAMAA 427

Query: 441 GCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLHRE-VWGQ 499
           G ++ + +F  F   F    R  L +  LT ++ TDG ++ E   ++L   L     WGQ
Sbjct: 428 GLSLPQANFGAFAAAFDAEVRRQLCEEDLTGRLLTDGQLSVEEFHLELARALRNAGPWGQ 487

Query: 500 GFAPPTFSEEVEVVSQRLVGEKHLSLKLRHQ--GQPIDAMWFSHTEPLPPR-----VKLA 552
            F  P F    ++V QR+VGE+HL L L+ +     +D + F+    + P       +LA
Sbjct: 488 HFPEPMFHGVFQLVQQRIVGERHLKLVLKSECGSLTLDGIAFNVDREIWPNPTVRWAELA 547

Query: 553 FRLDADEWQGVRRLRFLV 570
           ++LD +E++G   ++ +V
Sbjct: 548 YKLDVNEYRGQESVQLMV 565