Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 600 a.a., single-stranded-DNA-specific exonuclease from Sinorhizobium meliloti 1021

 Score =  266 bits (681), Expect = 1e-75
 Identities = 210/574 (36%), Positives = 287/574 (50%), Gaps = 41/574 (7%)

Query: 20  GVHPLLARLFAARGVRAKDE---LDDGLARLL-SPDTLRGTHDAAVLLADAIAQDKRLCI 75
           G   L+AR+ A RGV   D    L+  L  L+  PDTL     AA  LADAI + +++ I
Sbjct: 44  GYSELIARVLAGRGVGLDDAAAFLEPTLRALMPDPDTLTDGRKAAERLADAIRRREKVVI 103

Query: 76  VADYDCDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITV 135
             DYD DGA + A+  R LR        Y +PDR+ +GYG  P   +++   G+++++TV
Sbjct: 104 FGDYDVDGAASSALMARFLRHFDITAEIY-IPDRIFEGYGPNPQAIDQLIDRGSELIVTV 162

Query: 136 DNGIASVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMF 195
           D G  S E +A A  R   V+V DHH  G  LP    LVNPN+         +   GV++
Sbjct: 163 DCGSTSHEALAVAAERRTDVVVIDHHQVGSVLPPCHALVNPNREDDLSGQGHLCAAGVVY 222

Query: 196 YVLLALRSELRKRGVFDTATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAG 255
            VL+     LR RG    A    L +LL LVAL TV DVV L   NR  V +GL   R  
Sbjct: 223 LVLVNTLRVLRLRG-DPRAASFDLLSLLDLVALATVCDVVPLKGLNRAYVVKGLLAARHM 281

Query: 256 AMPAGVAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEEL 315
              AG+AAL + A+      T +  GF LGPRINA GR+ D  LG   L  D A  AE +
Sbjct: 282 G-NAGLAALLRKAA-IGGPVTPYHLGFLLGPRINAGGRIGDAALGSRLLTLDVAAAAEAI 339

Query: 316 ARMLDGINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGI 375
           A  LD +NR+R+ +E  M  +A   AE L   GT GEG +     I      +H G+VG+
Sbjct: 340 ASQLDELNRDRQAMEAAMLAEA--EAEVLAEYGT-GEGAS----VIVTARQNWHPGIVGL 392

Query: 376 VASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHL----RDALDLVAKRHPGVLL 431
           +A+RIK++F RP F  A            GSGRSI GF +    R A+D       G+L+
Sbjct: 393 IAARIKEKFRRPAFAIAFD----PNGRGTGSGRSINGFDMGRLVRAAVD------NGLLV 442

Query: 432 RFGGHAMAAGCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDT 491
           + GGHAMAAG TV R       + F + A   + D    + ++ DG +A     +DLVD 
Sbjct: 443 KGGGHAMAAGLTVERGKLGQLRQFFEERAETAIRDLVAVQTLKVDGALAAAGATLDLVDL 502

Query: 492 LHRE-VWGQGFAPPTFS-EEVEVVSQRLVGEKHLSLKLRHQ-GQPIDAMWFSHTE-PL-- 545
           L +   +G G   P F+  +  +   R VG  H+ + L  Q G  ++ + F   E PL  
Sbjct: 503 LDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGSRMEGIAFRAAETPLGD 562

Query: 546 ------PPRVKLAFRLDADEWQGVRRLRFLVEGA 573
                    V +A  + AD WQG R+++  V  A
Sbjct: 563 FLLGNRGATVHVAGSVSADLWQGTRKVQLRVTDA 596