Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 606 a.a., RecJ exonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score =  255 bits (651), Expect = 4e-72
 Identities = 190/534 (35%), Positives = 268/534 (50%), Gaps = 32/534 (5%)

Query: 17  EQAGVHPLLARLFAARGVRAKDELDDGL------ARLLSPDTLRGTHDAAVLLADAIAQD 70
           ++ GV  ++ R+   RGV+ ++   DG       A L  P  L     A   L+ A+   
Sbjct: 47  QRLGVPEVVGRVLTGRGVQVEEA--DGFLTPTLRALLPDPGHLLDMDKAVARLSKAVRDK 104

Query: 71  KRLCIVADYDCDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGAD 130
           + + I  DYD DGAT+ A+  R  R LGA+ + + +PDRV++GYG   P  E +AA GA 
Sbjct: 105 ETIAIFGDYDVDGATSTALMHRFFRSLGARVLIH-IPDRVLEGYGPNAPALEALAAKGAR 163

Query: 131 MLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAG 190
           +++TVD GI++ + + AAKA GL V+V DHH    ELP A  +VNP +         +A 
Sbjct: 164 VVLTVDCGISAFDALRAAKAAGLDVVVCDHHEARTELPAAVAVVNPKRLDEASPHTHLAA 223

Query: 191 VGVMFYVLLALRSELRKRGVFDTATQPKLD--ALLPLVALGTVADVVKLDANNRRLVAQG 248
           VGV F + +A+  +LR  G F    +P  D  ALL LVALGTV D+V L   NR LV QG
Sbjct: 224 VGVAFLMAVAINRDLRDSGWFAAEQRPPPDLMALLDLVALGTVCDMVPLIGVNRALVQQG 283

Query: 249 LRRIRAGAMPAGVAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDD 308
           L+ I     P G+AAL +  S        F  GF LGPR+NA GR+    +G   L ++D
Sbjct: 284 LKVIAKRTNP-GIAALAE-VSGVRDRVDAFHLGFMLGPRVNAGGRVGQAGMGAALLSSED 341

Query: 309 AGRAEELARMLDGINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGF 368
                + AR LD  N  R++IE  +  QA+   E+  +N           P +      +
Sbjct: 342 PLECLDFARQLDAFNGARKEIEAAVLHQAIEQVEAAPANDL---------PLVFASGTDW 392

Query: 369 HEGVVGIVASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPG 428
           H GVVGIVASR+K+R+  P    A  G        KGSGRS+ G  L     ++A R  G
Sbjct: 393 HPGVVGIVASRLKERYGLPACAVALDGGLA-----KGSGRSVGGVDLGRV--VIAAREAG 445

Query: 429 VLLRFGGHAMAAGCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDL 488
           VL   GGHAMAAG ++  +  E F +   +  ++ +A  AL   ++ DG +        L
Sbjct: 446 VLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDVRGANAQL 505

Query: 489 VDTLHRE-VWGQGFAPPTFS-EEVEVVSQRLVGEKHLSLKLR-HQGQPIDAMWF 539
           V  L +   +G G   P F+     V    +VG  H+   L    G  + AM F
Sbjct: 506 VRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSGGSLKAMAF 559