Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella loihica PV-4

 Score =  490 bits (1261), Expect = e-143
 Identities = 268/562 (47%), Positives = 370/562 (65%), Gaps = 21/562 (3%)

Query: 23  PLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVADYDCD 82
           P+L +++A+RG    D+ +  LA LL P+TL+    AA ++ADA+A+ + + I+ D+D D
Sbjct: 22  PILKQVYASRGCTV-DDCELALANLLRPNTLKDVDKAAAIIADAMAKQQSILIIGDFDAD 80

Query: 83  GATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNGIASV 142
           GAT+ +V +  LR++GA NV YL+P+R   GYGL+P I +     GA++LITVDNGI+S+
Sbjct: 81  GATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVAQQKGAELLITVDNGISSI 140

Query: 143 EGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVLLALR 202
           EGVAAAKA G+QV++TDHHLPG  +P AD +VNPNQ GC F SK+IAGVGV FY++ ALR
Sbjct: 141 EGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFASKAIAGVGVAFYLMSALR 200

Query: 203 SELRKRGVFDT--ATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGAMPAG 260
           +ELR RG +      +P L  LL +VALGTVADVV LD NNR LV  GL+R+RAG    G
Sbjct: 201 AELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNRILVDAGLKRVRAGRCRPG 260

Query: 261 VAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELARMLD 320
           + AL + A R+ S     DFGFA+GPR+NAAGRL +M LG+E LL DD  RA  +A  LD
Sbjct: 261 ITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMRARRMASELD 320

Query: 321 GINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIVASRI 380
           G+N ERR++E GM+ +AL   ESL  N       A  P  I+++   +H+GV+GI+ASRI
Sbjct: 321 GLNAERRELETGMQQEALKSLESLSLNE------AELPWGIALYQQDWHQGVIGILASRI 374

Query: 381 KDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAMAA 440
           KD++HRP   FA +G    E E+KGS RSI G H+RD L+L+  RHPG++++FGGHAMAA
Sbjct: 375 KDKYHRPVIAFAEAG----EGEIKGSARSIKGLHMRDLLELINARHPGMIIKFGGHAMAA 430

Query: 441 GCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLHRE-VWGQ 499
           G ++    FE F K + +  RELLA   LT +I +DG ++   + + L   L     WGQ
Sbjct: 431 GLSLRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARELRSAGPWGQ 490

Query: 500 GFAPPTFSEEVEVVSQRLVGEKHLSLKLRHQ-GQP-IDAMWFSHTEPLPP-----RVKLA 552
            F  P F     ++ QR+VGE+HL L L  + GQ  +DA+ F+      P       ++A
Sbjct: 491 NFPEPIFDGVFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDATIQYAEVA 550

Query: 553 FRLDADEWQGVRRLRFLVEGAE 574
           ++LD +E++G   L+ +VE  E
Sbjct: 551 YKLDINEFRGNESLQLMVEQIE 572