Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  479 bits (1232), Expect = e-139
 Identities = 266/562 (47%), Positives = 360/562 (64%), Gaps = 21/562 (3%)

Query: 23  PLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVADYDCD 82
           PLL +L+A RGV    E +  L  LL PDT++G   AA L+ADA+  DK + IV D+D D
Sbjct: 22  PLLRQLYARRGV-LPSECELVLKGLLRPDTMKGLDLAAKLIADAMQLDKSILIVGDFDAD 80

Query: 83  GATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNGIASV 142
           GAT+ +V +  LR++GA  V YL+P+R   GYGL+P I    A+  A +LITVDNGI+S+
Sbjct: 81  GATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAQLLITVDNGISSI 140

Query: 143 EGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVLLALR 202
           EGVAAAKA G+QV++TDHHLPG ELP AD +VNPNQPGC+F SKSIAGVGV FY++ ALR
Sbjct: 141 EGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFASKSIAGVGVAFYLMTALR 200

Query: 203 SELRKRGVFDT--ATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGAMPAG 260
           +ELR R  +      +P L  LL +VALGTVADVV LD NNR LV  GL+R+R+G    G
Sbjct: 201 AELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNRILVEAGLQRVRSGRCRVG 260

Query: 261 VAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELARMLD 320
           + AL + A R+ +     DFGFA+GPR+NAAGRL +M LG+E LL +D   A  +A  LD
Sbjct: 261 ITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYARRMAAELD 320

Query: 321 GINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIVASRI 380
            +N+ERR++E GM+ +AL   E L  N          P  I++F   +H+GV+GI+ASRI
Sbjct: 321 SLNQERRELEVGMQQEALKSLEYLKLNEEQ------LPWGIALFQEDWHQGVIGILASRI 374

Query: 381 KDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAMAA 440
           KD++HRP   FA +G      E+KGS RSI G H+RD L+LV  RHPG++ +FGGHAMAA
Sbjct: 375 KDKYHRPVIAFADAG----NGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAA 430

Query: 441 GCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLHRE-VWGQ 499
           G T+    F TF K +    RE L    LT ++ +DG +    + +++   L     WGQ
Sbjct: 431 GLTLKSGGFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQ 490

Query: 500 GFAPPTFSEEVEVVSQRLVGEKHLSLKLRHQGQPI--DAMWFS---HTEP--LPPRVKLA 552
            F  P F    +++ QR+VG++HL L L  Q   +  DA+ F+   HT P       ++ 
Sbjct: 491 SFEEPLFDGYFKIIQQRIVGDRHLKLVLETQCGTVMLDAIAFNVALHTWPDATIQHARIV 550

Query: 553 FRLDADEWQGVRRLRFLVEGAE 574
           ++LD +E++G   L+ +VE  E
Sbjct: 551 YKLDVNEYRGNFTLQLMVEQIE 572