Pairwise Alignments

Query, 183 a.a., LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) from Variovorax sp. SCN45

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 20/176 (11%)

Query: 9   RLIRFNKPYGVLSQFTPEGRWRGLK--DFIDIPGVYVAGRLDADSEGLLLLTDDGKLQAR 66
           R I  +KP GV+           L   D ++I  ++ AGRLD D+ GLLL+TDDG+   R
Sbjct: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119

Query: 67  IADPRFKMEKIYWVQVEGTPTEEALAALRAGVQLNDGPTRPARARLLDPPPQVWERQPPI 126
           +  P+ K EK Y V +      +       G++L          R L  P Q+       
Sbjct: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRG-------ERELTLPAQL------- 165

Query: 127 RERKSIPTAWLELAIREGRNRQVRRMTAAVGLPTLRLIRAAIGPHTL-EGLAPGSW 181
              + I    + L I EG+  QV+RM AA+G   + L R  IG  TL E L PG +
Sbjct: 166 ---EVISETEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEY 218