Pairwise Alignments

Query, 183 a.a., LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) from Variovorax sp. SCN45

Subject, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

 Score =  200 bits (509), Expect = 1e-56
 Identities = 103/178 (57%), Positives = 123/178 (69%), Gaps = 2/178 (1%)

Query: 5   SPSSR-LIRFNKPYGVLSQFTPEGRWRGLKDFIDIPGVYVAGRLDADSEGLLLLTDDGKL 63
           SP+ R +I FNKPY  LSQFT     + L D+I I  VY AGRLD DSEGLL+LT+DG L
Sbjct: 60  SPAERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYAAGRLDRDSEGLLILTNDGIL 119

Query: 64  QARIADPRFKMEKIYWVQVEGTPTEEALAALRAGVQLNDGPTRPARARLLDPPPQVWERQ 123
           QAR+  P+ K  K YWVQVEG+P E  L ALR GV L DGPT PA+  ++ P P +W R 
Sbjct: 120 QARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIM-PEPTLWPRN 178

Query: 124 PPIRERKSIPTAWLELAIREGRNRQVRRMTAAVGLPTLRLIRAAIGPHTLEGLAPGSW 181
           PP+R R +IPT WL + + EGRNRQVRRMTA +G PTLRLIR ++G   L  L PG W
Sbjct: 179 PPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPGEW 236