Pairwise Alignments

Query, 183 a.a., LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) from Variovorax sp. SCN45

Subject, 182 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (326), Expect = 2e-35
 Identities = 80/172 (46%), Positives = 104/172 (60%), Gaps = 9/172 (5%)

Query: 15  KPYGVLSQFTPEGRWRG--LKDFIDIP-GVYVAGRLDADSEGLLLLTDDGKLQARIADPR 71
           KPYG LSQF  E R R   L +  + P G+   GRLD DSEGLLLLT DGK    +    
Sbjct: 4   KPYGYLSQFVGERRKRKPLLGELANFPTGIMAIGRLDHDSEGLLLLTTDGKTSHAVRSK- 62

Query: 72  FKMEKIYWVQVEGTPTEEALAALRAGVQLN----DGPTRPARARLLDPPPQVWERQPPIR 127
             +EK Y++Q++G  TE+A+++L  GV++        T P RAR LD  P +  R   IR
Sbjct: 63  -SIEKEYYLQLDGEITEQAISSLCEGVEIGIKGEKYRTLPCRARRLDQAPDLPPRGRKIR 121

Query: 128 ERKSIPTAWLELAIREGRNRQVRRMTAAVGLPTLRLIRAAIGPHTLEGLAPG 179
           + +  PT+WL + I EG+NRQ+R+MTAAVG  TLRL+R  IG   L  L PG
Sbjct: 122 DARHGPTSWLAITITEGKNRQLRKMTAAVGFATLRLVRVRIGDIRLGTLQPG 173