Pairwise Alignments

Query, 542 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  228 bits (580), Expect = 6e-64
 Identities = 170/533 (31%), Positives = 264/533 (49%), Gaps = 35/533 (6%)

Query: 28  LGDVIHRSARRFGERTALIEGEH--RLSYRALDAASNRFAHHLLDLGLEKGERVGMLCNN 85
           +G+   + A++  +R  L+  +   R +Y+  D  ++  A  LL++G++KG+ +G+   N
Sbjct: 8   IGEFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWARN 67

Query: 86  SIQMVVAMLGIQKAGLVWVPINTALGVEAIGYILSHAEVRHVVI----------DTALHA 135
               +  M    K G+V V +NTA     + Y++  ++++ + I          +     
Sbjct: 68  VPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYEL 127

Query: 136 KPELRELLQATGVS---PLL--CVLDGDAPPPGIATVPQAIAQG----PETLPDV--AID 184
            PEL+   +    S   P L   +  G     G+    + +  G     E L +    +D
Sbjct: 128 VPELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVSDEKLIEAKKGLD 187

Query: 185 SADLALIMYTSGTTGRQKGVMHSHASVHSVLLSNMVEWGSSPERADVWSSVLP--LFHC- 241
           S D+  + YTSGTTG  KGVM +H ++    L+N    G   +  +     LP  LFHC 
Sbjct: 188 SDDVINMQYTSGTTGFPKGVMLTHKNI----LNNGYYIGEKQKFTEEERLCLPVPLFHCF 243

Query: 242 GQHTVLMSALAVGGALVVLRGFDPGAVLAAIERHKITVMVGLPMMYGALLAHPQRAARDL 301
           G    +++ L  GG LV+L  FDP  VLAAI++ K T + G+P M+ A  +HP     DL
Sbjct: 244 GIVLGVLALLTHGGTLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEMFDL 303

Query: 302 SSLRLCVYAMAPMSRTLLLRLL-DEFCPNFALVSGQTEMYPGATIFEAHEQRRRFGSYWG 360
           SSLR  + A +      + +++ D +     +  G TE  P  T+    +   +     G
Sbjct: 304 SSLRTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTEASPVFTMTSVDDPFEKRVESVG 363

Query: 361 VGTLVNEVAVMGDD-GELLGTDQVGEIVFRGPNVMLGYYKDPEATAHA-QRFGWHHSGDL 418
                 EV ++  + GE L    VGEI  RG NVM GYYK PE TA   ++ GW HSGDL
Sbjct: 364 KAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTAEVIEKDGWLHSGDL 423

Query: 419 GRMDEDGQLIFLDRLKDMVKSGGENVPSIKVEEVLLRHPGVMNAAVVGLPHEHWGEAITA 478
              DEDG    + R+KDM+  GGEN+   ++EE L   PG+ +A VVG+P E +GE + A
Sbjct: 424 AVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKYGEIVGA 483

Query: 479 FVTRRPDAPADFTEAVLTAHCKEHLGGFEVPKQIIFLPALPMTSTGKIQKFEL 531
           FV   P    +  E  +     E +  ++VPK +  +   PMT++GKIQKF+L
Sbjct: 484 FVI--PKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQKFKL 534