Pairwise Alignments

Query, 319 a.a., Permease of the drug/metabolite transporter (DMT) superfamily from Variovorax sp. SCN45

Subject, 330 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 86/285 (30%), Positives = 127/285 (44%), Gaps = 11/285 (3%)

Query: 27  VDLVLLGALWGASFLFMRIGAAEFGALPAAAVRVAIASLFLLPIALLR-GQGPTIAKHWK 85
           + L +  ALWG +F   RI   +   L  A  R  +A+  LL I   R G  P   +   
Sbjct: 22  LQLAIATALWGGTFTAGRIAVQQLSPLAVACGRYLLATTVLLLILWQREGWPPLNRRQQL 81

Query: 86  ASFAVGVFNSGLPFALFCFALLSINSGLAAVLNATTPMFGALVAWAWFRERPAGSRIVGL 145
             F +GV    L   LF   L  I +  AA++ A  P   AL A  W  +R    +  G+
Sbjct: 82  LLFGLGVSGIALYNWLFFIGLSLIPASRAALIIALNPTAIALGAAIWTGDRLRSWQWAGV 141

Query: 146 VIGFAG-VAMLASRSAGVHAGATGHAALWAVLACLGACLCYGISASATRRHLGGVPALTT 204
            +   G + +L SR AG           W  LA +G  LC+ + +   R+ L  +  LT 
Sbjct: 142 GLSLIGAILLLGSRQAGALT-----LPGWGDLALVGCVLCWTVYSLLARQALRSLSPLTV 196

Query: 205 ATGSQIGATLFLAIPAFMLWPTQMP---SLRAWLALLALGIACTGIAYILFFRLIERAGP 261
            TG+    ++ L I  ++    Q+P   S     A+  LG+  T +A+ L+   IER G 
Sbjct: 197 TTGACCWGSVLL-IGLWLGQGAQLPVNVSFSTGSAIAFLGLGGTALAFCLYANGIERLGA 255

Query: 262 ARALTVTFLVPVFALFYGAVFLDEHITQWMLICAAVIVCGVALST 306
           ARA     LVPVF    GA+ L E ++   L+   +++ GV L T
Sbjct: 256 ARAGLFINLVPVFGSAIGALLLQEPLSGLTLLGGLLVLAGVGLGT 300



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 181 ACLCYGISASATRRHLGGVPALTTATGSQIGATLFLAIPAFMLWPTQ-MPSL--RAWLAL 237
           A   +G + +A R  +  +  L  A G  + AT  L +   +LW  +  P L  R  L L
Sbjct: 27  ATALWGGTFTAGRIAVQQLSPLAVACGRYLLATTVLLL---ILWQREGWPPLNRRQQLLL 83

Query: 238 LALGIACTGIAYILFFRLIERAGPARALTVTFLVPVFALFYGAVFLDEHITQWMLICAAV 297
             LG++   +   LFF  +     +RA  +  L P       A++  + +  W      +
Sbjct: 84  FGLGVSGIALYNWLFFIGLSLIPASRAALIIALNPTAIALGAAIWTGDRLRSWQWAGVGL 143

Query: 298 IVCGVALSTG 307
            + G  L  G
Sbjct: 144 SLIGAILLLG 153