Pairwise Alignments

Query, 697 a.a., Zinc-regulated outer membrane receptor from Variovorax sp. SCN45

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 32/225 (14%)

Query: 10  IGAAVLSLAALAGAAQAQTAPTPSTADNASLREVTVTGNPLGA--SDLIAPTTTLSGDKL 67
           + AAVLS+ A AG A A+T P+          EV VT N +    S++      L G+ L
Sbjct: 6   VSAAVLSVLA-AGFAHAETEPS-------HYEEVVVTANRIEQPLSEVAGSVAVLEGETL 57

Query: 68  LLRSESTLGETLNNLPGVSSSYFGPNASRPSIRGQDGDRIRILQNGGGAPD---ASALSY 124
             + ++ L + LN  PGVS +         +IRG  G+RI I+++G  + D   A+ ++ 
Sbjct: 58  EKQGKTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADIND 117

Query: 125 DHAVPVDALV-TERIEVLRGPSALQYGGSAVGGVVNVIDNRIPTEPI------------- 170
            +     +L   ++I+V++G S+  YG  A+GGVV +I+++ P + +             
Sbjct: 118 KYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVV-IIESKAPEDYLYHRDYYVDAALTY 176

Query: 171 NGFGGRADLGYATGNKEKSGGVLLE----GGNERIAVHVDAFNRD 211
           +G   R    +A   +   G  LL      G E    + D +NR+
Sbjct: 177 SGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNRE 221



 Score = 29.3 bits (64), Expect = 7e-04
 Identities = 37/188 (19%), Positives = 67/188 (35%), Gaps = 38/188 (20%)

Query: 474 LKKEKSTGFDLGAQWKDGPNTARVNAYVTRFRNYIGLTASGRELDSEGNVAEPGTPDTLA 533
           L+ E S  F+LG+++ +G     V  + + F N+I +   G          +  T   + 
Sbjct: 505 LRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVG---------YDNATGSVIQ 555

Query: 534 EYLYGGVRARFTGIEANGNLRLLGADGFARMADAGTLDLEWRGD----IVRAKNLDTGEP 589
           +Y          G++  G          A M+    LD  W  +     V  K+    + 
Sbjct: 556 QY------QNIAGVKTYG----------AEMSVMHRLDDRWSVENKLGYVDGKD-GENQY 598

Query: 590 LPRIAPLRLGATLAYGNGPWTARLGFDYNAAQHRVPSVGARE--------TDAYTLWNAA 641
           +  + PL     L Y    W A    ++ +A  RVP+    +        T  +  W+  
Sbjct: 599 VRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIG 658

Query: 642 ITYRMKVQ 649
           + Y+   Q
Sbjct: 659 LNYQWNAQ 666



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 23/104 (22%)

Query: 574 WRGDIVRAKNLDTGEPLPRIAPLRLGATLAYGNGPWTARLGFDYNAAQHRVPSVGARETD 633
           W  D +R K     E     A  R G +    +  W     ++Y  +Q R+ SVGA  T 
Sbjct: 234 WLNDALRLKT--HLEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGADYT- 290

Query: 634 AYTLWNAAITYRMKVQRANLTWYARMDNITNKLAYSPTSILTTT 677
                            ANL+W   MD +  K  +  T  +T T
Sbjct: 291 -----------------ANLSW---MDTLEGKFYWRSTENITQT 314