Pairwise Alignments

Query, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  320 bits (819), Expect = 7e-92
 Identities = 174/445 (39%), Positives = 273/445 (61%), Gaps = 23/445 (5%)

Query: 1   MSVVMVATMVL-CFALSISVAVSIGLASILGIQVTNANMLISVKE-MFNSI-NKFPLAAI 57
           M+V ++  +V+    + + +A+S+GL+SIL +   +   L SV + +FN+    + L AI
Sbjct: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60

Query: 58  PFFILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIG 117
           PFFILA   M TGG+++R++ FA ++VG  +GGL +  V+ CM+FAA+SGSS AT  AIG
Sbjct: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120

Query: 118 AILIPALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSAEVSIGELFIAGFGPGI 177
           +I+I  ++K+GY   +AA +   +  LG++IPPSI M++Y  +  VS+G +F+ G  PG+
Sbjct: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180

Query: 178 LISLALMLFVWVYCKWKGWGKNDGEGRMPFGRALWQAGWALLMPVIILGGIYGGVFTPTE 237
           L  L L++ +++  + K   K    G     +A  +A W LL+ VIILGGIYGG+FTPTE
Sbjct: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240

Query: 238 ASAVAVFYALVVGMVIYRE--------------IKL------KDLYVILRKSVMSSAVIM 277
           A+AVA  Y+  +   IYR+              +K+      KD    L  +   + ++M
Sbjct: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300

Query: 278 FIIANAGLFAFLITRAGVPDAIGHWLQQVLQSPAMFLLGVNAALFVIGMFIETSAAIIVL 337
           FIIANA +   ++T   +P  I   +      P  FL+ VN  L V G F+E S  ++++
Sbjct: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360

Query: 338 APILAPVAVHFGIDPVHFGLIMVVNLALGMITPPFGVNLFAACTVARISLDRIVRHLVPF 397
           AP++ P+A+  GIDP+H G++MVVN+ +GMITPP G+NLF    VA++S+  +V+  +P+
Sbjct: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420

Query: 398 VLVIMACLMVITYVPWVSLALRDLV 422
           V V+   L+++TYVPWVS  L  L+
Sbjct: 421 VGVMFLFLIIVTYVPWVSTWLPTLL 445