Pairwise Alignments

Query, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 419 a.a., transmembrane protein from Sinorhizobium meliloti 1021

 Score =  285 bits (728), Expect = 2e-81
 Identities = 147/418 (35%), Positives = 253/418 (60%), Gaps = 6/418 (1%)

Query: 5   MVATMVLCFALSISVAVSIGLASILGIQVT-----NANMLISVKEMFNSINKFPLAAIPF 59
           M A M   FA  ++++V +G A I+              +++V ++F     FPL AIPF
Sbjct: 1   MTAIMTGLFAALLAISVPVGYALIIAAGAAILWQGGTPTVLAVVKLFQPTQSFPLLAIPF 60

Query: 60  FILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGAI 119
           FIL+G+LM +G + ++LV+FA ++VG   GG+    V+   IF  VSGS+VA   A+G++
Sbjct: 61  FILSGSLMMSGTLGQKLVQFAAALVGRFHGGMGQVTVVGSTIFGGVSGSAVAEASALGSM 120

Query: 120 LIPALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSAEVSIGELFIAGFGPGILI 179
           LIP   K GYP  +AAA+ A+S+ +  +IPPSIP+IL+   A  SI  LF A   PG+++
Sbjct: 121 LIPWQKKEGYPAGFAAAVTASSSTIAGLIPPSIPLILFSTVANSSIASLFSAAVLPGLML 180

Query: 180 SLALMLFVWVYCKWKGWGKNDGEGRMP-FGRALWQAGWALLMPVIILGGIYGGVFTPTEA 238
           +  +M+  ++  + + + +    G++  FGR++  A  AL MP  I+  +  G+ TPTE 
Sbjct: 181 AGGMMIVCYLSGRIRNFPRLTDAGQLKSFGRSMLSALPALAMPFFIILLLRAGIATPTEV 240

Query: 239 SAVAVFYALVVGMVIYREIKLKDLYVILRKSVMSSAVIMFIIANAGLFAFLITRAGVPDA 298
           S +AVFYAL+V +++YR++  + +Y  L  +V+++ V+M +IA + L   ++    VP  
Sbjct: 241 SVIAVFYALLVSLLLYRDLTWERIYAALVGTVITTGVVMLVIAASSLVGHVLITERVPTI 300

Query: 299 IGHWLQQVLQSPAMFLLGVNAALFVIGMFIETSAAIIVLAPILAPVAVHFGIDPVHFGLI 358
           + +W  + L S  + +L +N  + V+GMF++  AAI++L P    +    G+DP+  G++
Sbjct: 301 VANWALETLGSAILIILMMNLIMLVVGMFLDLPAAILLLGPTFVAIGHAIGMDPIQLGVM 360

Query: 359 MVVNLALGMITPPFGVNLFAACTVARISLDRIVRHLVPFVLVIMACLMVITYVPWVSL 416
           + +NL++G+ TPP G  LF    +AR+ +  +V+ L PF +V  A L++++YVP +++
Sbjct: 361 ICINLSIGLFTPPIGTTLFIGAVIARVPIGAVVKELWPFYIVAAAVLVLMSYVPALTI 418