Pairwise Alignments

Query, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 331 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score =  103 bits (258), Expect = 4e-27
 Identities = 76/310 (24%), Positives = 141/310 (45%), Gaps = 6/310 (1%)

Query: 6   IAAACLSLALSSVAFAQTTMKISISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQTFYNGS 65
           +    LS   +++A     +K S    + + +G     F K  E+R  G+ KV+ + N +
Sbjct: 10  LCTLALSAGGNALAAEPIVIKFSHVVGEQTPKGQGALMFKKLAEERLPGKVKVEVYPNST 69

Query: 66  LGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGPIGQDM 125
           L G+ + +EA+ LG  ++   S      +    ++ D+PFLF D          P GQ +
Sbjct: 70  LYGDDKEMEALLLGEVQIIARSLAKFEQYTKSVQLFDLPFLFDDIPAVDRFQQSPEGQKL 129

Query: 126 LTKFDAKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGFGIITT 185
           L   ++K    LA+  NG + ++ +K  ++ PED + L  R   + V    +K       
Sbjct: 130 LKSMESKNITGLAYWHNGMKQLSANK-PLRTPEDARDLTFRIQTSAVLEEQFKAVDAKAK 188

Query: 186 PMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKATFDKL 245
           PM F  V+  L+ G V+G EN      + K ++VQK+++ + H     + +   + F K 
Sbjct: 189 PMIFSVVYQGLRTGLVNGTENTYSNFYNQKLNEVQKYVTESNHGILDYMLI-TTSDFWKG 247

Query: 246 SAADKQAFLD--AAKEGTKANR--ARVDEDDAKGVADLRAKGMTVVDNVDKARFVAALAP 301
              D ++ LD    +    AN+   R ++ D + V D +   +  +    +  +   + P
Sbjct: 248 LPPDIRSELDKIVVESTAYANQEAERFNQQDKQHVLDAKTTEIITLTPEQRNAWREKMKP 307

Query: 302 VNAQFEKDFG 311
           V A+FE++ G
Sbjct: 308 VWAKFEQEIG 317