Pairwise Alignments

Query, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

 Score =  180 bits (456), Expect = 5e-50
 Identities = 93/286 (32%), Positives = 161/286 (56%), Gaps = 5/286 (1%)

Query: 6   IAAACLSLALSSVA-----FAQTTMKISISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQT 60
           +A   ++  LS+ A     F    +++S    ++   G  I      +++++GG+ K+  
Sbjct: 6   LATTAIAFGLSAAAPAFAEFNDRNIRVSNGINEDHPVGNGIKAMQACLDQKSGGKLKLTA 65

Query: 61  FYNGSLGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGP 120
           F+ G+LGG+ ++ +A++ G QE   +S+ P+   +P   + D+PFLF +   A  VLDG 
Sbjct: 66  FWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEAYTVLDGD 125

Query: 121 IGQDMLTKFDAKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGF 180
            G  M  K +A G   LA+ ENGFR+++NS R V   ED +G+K+R M+N + +  ++  
Sbjct: 126 FGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIFLDTFQNL 185

Query: 181 GIITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKA 240
           G   TPMAF EVF+AL+   +D QENP   I ++KF +VQK+++ T H Y+P +F+ +K 
Sbjct: 186 GANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPFLFLFSKP 245

Query: 241 TFDKLSAADKQAFLDAAKEGTKANRARVDEDDAKGVADLRAKGMTV 286
            FD  +  ++ A  + A  G    R  + + + K +  ++  G+ V
Sbjct: 246 IFDSYTPEEQAALRECAVVGRDEERKVIQDLNKKSLEKIKEAGLEV 291