Pairwise Alignments

Query, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 324 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  150 bits (378), Expect = 5e-41
 Identities = 109/323 (33%), Positives = 167/323 (51%), Gaps = 13/323 (4%)

Query: 6   IAAACLSLALSSVAFAQTTMKIS--ISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQTFYN 63
           + A    LA +  A AQT +K +    T++  H        A+E+ KRT GRYK+  F  
Sbjct: 9   LGATATILASALSAHAQTALKWAHVYETSEPFHTESV--WAAEEIAKRTEGRYKIDVFPA 66

Query: 64  GSLGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGPIGQ 123
             LG E +  + ++LGT ++  S +           +   P++FRD AH  A     + +
Sbjct: 67  SQLGKEADINQGLKLGTVDIIISGSSFAARDHAPIGVTYFPYIFRDPAHMIAYTKSDVFK 126

Query: 124 DMLTKFD-AKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGFGI 182
            +   ++ A G    A    G RH T S R +    D++GLKMR  + P ++A  +  G 
Sbjct: 127 RLAAGYEEASGNHITAVTYYGTRH-TTSNRPIAKCADMQGLKMRVPDVPAYLAMPRACGA 185

Query: 183 ITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKATF 242
            TTP+AF EV+ ALQ GTV+ QENPL  I + KF +VQKH+ LTGH+      V++K  +
Sbjct: 186 NTTPIAFAEVYLALQNGTVEAQENPLTTIEAKKFFEVQKHIVLTGHIVDHLNTVVSKNLW 245

Query: 243 DKLSAADKQAFLDAAKEGTKANRARVDEDDAKGVADLRAKGMTVVDNVDKARFVAALAPV 302
            +LS ADKQ F +  +E        ++E + + VA  + +G+ V + VD+A F      V
Sbjct: 246 SQLSDADKQIFTEVMQEAAVRATKIIEEREKELVATFKERGIEVTE-VDRADFEKT---V 301

Query: 303 NAQFE-KDFG--KANLDKIRDYK 322
           N + + +DFG  K + + IR  K
Sbjct: 302 NEKVKLEDFGYNKEDWEAIRAIK 324