Pairwise Alignments

Query, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 330 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  152 bits (385), Expect = 8e-42
 Identities = 99/313 (31%), Positives = 151/313 (48%), Gaps = 4/313 (1%)

Query: 1   MKFGPIAAACLSLALSSVAFAQTTMKISISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQT 60
           +K G +A A L  AL + A + T ++ +   A+   Q V     A+ +   TGG   V  
Sbjct: 5   LKHGRVAGAMLGAALLAGAASATELRYAHVGAEGDIQTVYAAQAAEGIAAATGGEVTVTV 64

Query: 61  FYNGSLGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLD-- 118
           +    LGG  E ++ V++G+  +       +   VPE  + + PF++RD AHA A  D  
Sbjct: 65  YPASQLGGVAEMVDGVRMGSISMGHHDFASLARLVPEVAVFNAPFIYRDGAHALAATDPQ 124

Query: 119 -GPIGQDMLTKFDAKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAY 177
             P  Q +  K  A+G + +     G RH++ S   VK P DL G   R +   + ++  
Sbjct: 125 SSPALQAINEKLIAQGVRIVGRIYRGDRHIS-SNFPVKTPADLAGKPFRAVPLELWVSMV 183

Query: 178 KGFGIITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVM 237
           KGFG I TP+   E+ TAL  G V GQENPL  I S   ++VQ HLS+TGH+ +     +
Sbjct: 184 KGFGAIPTPVEVAELPTALMTGVVVGQENPLTRIASNNLNEVQSHLSMTGHMRAVLAVFI 243

Query: 238 NKATFDKLSAADKQAFLDAAKEGTKANRARVDEDDAKGVADLRAKGMTVVDNVDKARFVA 297
           N+  +  LS   + A      E  + +     E +A  V +L+ +GMTV+   +     A
Sbjct: 244 NEEVWQGLSEEQRTALTKVLDEEAQKSLKMATESEADLVKELKGRGMTVITEAEGLDVAA 303

Query: 298 ALAPVNAQFEKDF 310
               V AQ  +DF
Sbjct: 304 FREKVGAQIGQDF 316