Pairwise Alignments

Query, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 331 a.a., TRAP-type large permease component from Sinorhizobium meliloti 1021

 Score =  103 bits (257), Expect = 6e-27
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 4   GPIAAACLSLALSSVAFAQTT--MKISISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQTF 61
           G  A A LSLA  S+  AQ T  +++ I T        A     + ++  T GR  +  F
Sbjct: 11  GVAAGAALSLATPSLVRAQETRTLRLGIVTPPGHPWNNAALKVGEALKAETNGRLSISVF 70

Query: 62  YNGSLGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGPI 121
             G LG E   ++ +Q G  +L +  T  + + +P    ++ P++    A    ++  P+
Sbjct: 71  PAGQLGNEAAMLQQMQSGALDLGWIMTAELGSRIPAVAAINAPWVVDSTAKVAKLVREPV 130

Query: 122 GQDMLTKFDAK-GFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGF 180
              +L    A+ G   LAW     R + ++K ++   +D+ G+K+R    P +   Y+  
Sbjct: 131 AMKLLDVLPAETGTVGLAWGITTMRVVFSAK-EIAGLDDINGMKLRINTTPAYRDFYQLL 189

Query: 181 GIITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKA 240
           G   TP+  P VF A+  G VDG E  L    + +FD+V K +     ++ PC+ + +  
Sbjct: 190 GAAPTPIPTPAVFDAMSNGQVDGLEADLDFSWNQRFDKVSKTMLKMNAIFMPCVALASGR 249

Query: 241 TFDKLSAADKQ-------AFLDAAKEGTKANRARVDEDDAKGVADLRAKGMTVVD 288
            +  L  AD++       + LD   + T AN   + E  A   A +  K +TV D
Sbjct: 250 VWQTLPEADREIIARLTKSALDEQIDATVANEPALLEKFAG--AGIPIKDVTVAD 302