Pairwise Alignments

Query, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  189 bits (479), Expect = 1e-52
 Identities = 104/316 (32%), Positives = 181/316 (57%), Gaps = 4/316 (1%)

Query: 5   PIAAACLSLALSSVAFAQTTMKISISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQTFYNG 64
           P+A      AL+ +     T+K + +  +   Q   ++ FA+ V++++GG+ +V+ F  G
Sbjct: 15  PLALMTAGPALAEIR--DQTVKFASANNKGHPQVTGMEKFAELVKEKSGGKIEVKLFPGG 72

Query: 65  SLGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGPIGQD 124
           +LGG+ +++ A+Q G  E+   + G + + V E   +D+PFLF     A  V+DGP G  
Sbjct: 73  TLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDLPFLFDSGEEADKVMDGPFGTS 132

Query: 125 MLTKFDAKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGFGIIT 184
           ++ +  A G   +A+ E GFR++TN++  V   ED+KGLK+RT+++P+ +  +   G   
Sbjct: 133 LMERLPATGLVGVAYWELGFRNLTNNRHPVTKLEDIKGLKIRTIQSPIPVELFNALGANA 192

Query: 185 TPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKATFDK 244
            P+ + E++TAL+ GTVDGQENP   II+AKF +VQK+++LT H Y+P I +++K  +D 
Sbjct: 193 VPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKYMTLTRHQYNPQIVLVSKKFWDG 252

Query: 245 LSAADKQAFLDAAKEGTKANRARVDEDDAKGVADLRAKGMTV--VDNVDKARFVAALAPV 302
           L+  +K     AA E     R    E DA  + ++R  GM V  +   +  +   A+ P+
Sbjct: 253 LNDEEKTVLQQAAVEARDFQRKVSREQDAAALEEIRKTGMEVSELSAEETQKLRDAVKPM 312

Query: 303 NAQFEKDFGKANLDKI 318
             +F  D G+  ++ +
Sbjct: 313 IEKFSADIGQETVEAL 328