Pairwise Alignments

Query, 591 a.a., ATP-dependent DNA helicase RecQ from Variovorax sp. SCN45

Subject, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

 Score =  506 bits (1304), Expect = e-148
 Identities = 276/585 (47%), Positives = 377/585 (64%), Gaps = 26/585 (4%)

Query: 2   VGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAIVVSPLIALMHDQVGALHEAGVSAA 61
           + G D+LV+MPTGGGKSLCYQIPA+  +    GV +V+SPLI+LM DQV  L   GV+A 
Sbjct: 41  LAGRDSLVIMPTGGGKSLCYQIPALVLE----GVTLVISPLISLMKDQVDQLKANGVAAE 96

Query: 62  FLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEAH 121
            +NSTL  EE   +  RM  G++ LLY +PERV T  F+ +L  L     L++ A+DEAH
Sbjct: 97  CVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLP----LAMIAVDEAH 152

Query: 122 CVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADDLTRADIVERLQLEEARQFVSSFD 181
           C+SQWGHDFRPEY +L  L +R+  VP +ALTATADD TR DI++RLQL E  Q++ SFD
Sbjct: 153 CISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFD 212

Query: 182 RPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYHA 241
           RPNIRY +VEK    +Q++R++E +  G  G++YC SRK+VE +   L    I A  YHA
Sbjct: 213 RPNIRYMLVEKHKPVSQVIRYLETQR-GQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHA 271

Query: 242 GLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRAG 301
           G+DA  R   Q+ F R++  ++VAT+AFGMGI+KP+VRFV H D+P+NIE YYQETGRAG
Sbjct: 272 GMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 331

Query: 302 RDGGPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLLG 361
           RDG PA+A M Y   D+   RRM+DE P G + KQV   KL A+ + AEA  CRR  LL 
Sbjct: 332 RDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQ-KQVESHKLTAMGAFAEAQTCRRQVLLN 390

Query: 362 YFGE-KSTPCGNCDNCLNPPQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGKA 420
           YFGE +  PCGNCD CL+PP+ +D T+ ARK LS +YRV Q    +FG G+++++LRG  
Sbjct: 391 YFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQ----NFGIGYVVEVLRGMQ 446

Query: 421 TEKVKQFGHERVSTFGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVLR 480
             ++++ GH++++T+GIG + S      + RQLI  G L  +    +TL+LTE +R +LR
Sbjct: 447 NIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNSTLQLTEEARPLLR 506

Query: 481 GEAQVTLRESVSSPAERSKSRREKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVAKEHN 540
           GE  + L       A R+    + + K           +  KK F  L+  R  +A +  
Sbjct: 507 GEMNIELAVPRLDTAARAAKSDKLSGK-----------NYDKKLFAKLRKLRKSIADDEG 555

Query: 541 LPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAYGSEVL 585
           LP YV+F DATL  +AE  P +  ++  ++G+G +KLE Y    L
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFL 600