Pairwise Alignments

Query, 591 a.a., ATP-dependent DNA helicase RecQ from Variovorax sp. SCN45

Subject, 629 a.a., ATP-dependent DNA helicase RecQ (NCBI) from Rhodospirillum rubrum S1H

 Score =  522 bits (1344), Expect = e-152
 Identities = 287/590 (48%), Positives = 377/590 (63%), Gaps = 16/590 (2%)

Query: 1   VVGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAIVVSPLIALMHDQVGALHEAGVSA 60
           V+GG D L +MPTG GKSLCYQ+PA+ RQ    GV +VVSPLIALM DQV  L   GV+A
Sbjct: 55  VLGGEDVLAVMPTGSGKSLCYQLPALMRQ----GVTLVVSPLIALMRDQVAQLDALGVAA 110

Query: 61  AFLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEA 120
             LNS++D +  + V   +  G + LLY APER+  P  LS L   ++ G  +L AIDEA
Sbjct: 111 GALNSSIDMDGYRRVMDGLRGGRLKLLYVAPERLARPDTLSLL---RDSGVTAL-AIDEA 166

Query: 121 HCVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADDLTRADIVERLQLEEARQFVSSF 180
           HCVSQWGHDFRP+Y  L  + E   GV  +A TATAD  TR DI  RL     R F+  F
Sbjct: 167 HCVSQWGHDFRPDYLCLGKVREDLGGVQTVAFTATADAATRDDIAGRLFPAPPRLFIGGF 226

Query: 181 DRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYH 240
           DRPN+R  +  K D   ++  F+   H G++GV+YC SR R E++A  LR AG  ALPYH
Sbjct: 227 DRPNLRLAMRPKGDTRRRMFEFVAA-HTGESGVIYCGSRARTEELAEGLRGAGHRALPYH 285

Query: 241 AGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRA 300
           AGLD  VR  +QD FL E+G+VMVAT+AFGMGIDKPDVRFV H DMP++IE YYQE GRA
Sbjct: 286 AGLDKPVRDANQDAFLAEDGLVMVATVAFGMGIDKPDVRFVCHADMPRSIEAYYQEIGRA 345

Query: 301 GRDGGPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLL 360
           GRDG  AD    YGL DV   R  I+ES AG+E K+V   +L+ALL+L EA  CRR  LL
Sbjct: 346 GRDGLAADTLTFYGLDDVRLHRMRIEESQAGDEQKRVEIQRLNALLALCEAPRCRRQTLL 405

Query: 361 GYFGEKSTPCGNCDNCLNPPQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGKA 420
           GYFGE++ PCGNCD C+N  + +DGT  A+K +S + R    +G  F   H+++IL G  
Sbjct: 406 GYFGERTEPCGNCDLCINGVESFDGTIEAQKAMSAMLR----TGQRFATEHLINILVGTQ 461

Query: 421 TEKVKQFGHERVSTFGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVLR 480
           T+ + Q+GH+++ TFG+G + +    R + RQ+ A G +++D        +TE  RAVLR
Sbjct: 462 TDAITQYGHDKLPTFGVGKDHTRNVWRSIFRQISAGGLISLDIANHGRWLMTEAGRAVLR 521

Query: 481 GEAQVTLRESVSSPAERSKSRREKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVAKEHN 540
           G+A V LR  V   A R + + ++    AP   A +L+   +  F+AL+A R E+A+  N
Sbjct: 522 GQAGVALRSDVLEAAGRGERKDKERRASAP---AVQLEADDRALFDALRAKRQELARAEN 578

Query: 541 LPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAYGSEVLRVCEA 590
           +PAYV+F D TL  +A + P +L+ ++ I GIG  KL  YG+  L V  A
Sbjct: 579 VPAYVVFADRTLIELATKRPPSLDAMREIHGIGQSKLARYGAAFLEVITA 628