Pairwise Alignments

Query, 591 a.a., ATP-dependent DNA helicase RecQ from Variovorax sp. SCN45

Subject, 610 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella loihica PV-4

 Score =  490 bits (1261), Expect = e-143
 Identities = 272/589 (46%), Positives = 385/589 (65%), Gaps = 32/589 (5%)

Query: 1   VVGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAIVVSPLIALMHDQVGALHEAGVSA 60
           V GG DALV+MPTGGGKSLCYQ+PA+      HG+ +VVSPLI+LM DQV +L + GV+A
Sbjct: 40  VCGGQDALVIMPTGGGKSLCYQLPALVL----HGLTLVVSPLISLMKDQVDSLKQMGVAA 95

Query: 61  AFLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEA 120
           A+LNS+   EE   + R++  GE+ LLY +PER+ T  F+ +L +L     LSLFAIDEA
Sbjct: 96  AYLNSSQSREEALTIYRQLHNGELKLLYVSPERLLTDSFIERLHNLP----LSLFAIDEA 151

Query: 121 HCVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADDLTRADIVERLQLEEARQFVSSF 180
           HC+SQWGHDFRPEY AL  L + +  VP +ALTATAD  TR DI +RL +    + ++SF
Sbjct: 152 HCISQWGHDFRPEYAALGQLKQLFPRVPMMALTATADKATREDICQRLGIAPF-ELLTSF 210

Query: 181 DRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYH 240
           DRPNIRYT+ EK +A  QL +FI+ ++ G++G++YC SR+RV++VA  LR  G +A  YH
Sbjct: 211 DRPNIRYTVAEKLNAANQLRQFIQAQN-GNSGIIYCSSRRRVDEVAERLRMQGYHADAYH 269

Query: 241 AGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRA 300
           AG     R   Q+RFL+++  ++VAT+AFGMGI+K +VRFV H D+PK++E YYQETGRA
Sbjct: 270 AGKTQEERADIQERFLKDQLDIVVATVAFGMGINKSNVRFVVHYDIPKSVEAYYQETGRA 329

Query: 301 GRDGGPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLL 360
           GRDG  A+A+M +   D+   R +I++   G + +QV   KL+ + + AEA  CRR  LL
Sbjct: 330 GRDGLDAEAFMLFDPADIGRVRHLIEQQEPGPQ-QQVEYHKLNTMAAFAEAQTCRRQVLL 388

Query: 361 GYFGEK-STPCGNCDNCLNPPQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGK 419
            YF E  S PCGNCD CL+PP+ +DG + A+K+LS I+R+QQ     FG  H++++LRG 
Sbjct: 389 HYFDESASEPCGNCDICLDPPKRYDGVEDAQKVLSCIFRLQQ----KFGVNHLIEVLRGS 444

Query: 420 ATEKVKQFGHERVSTFGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVL 479
               V   GH+++ST+GIG E S      ++RQ+I  G  + D    + +KL   +RAVL
Sbjct: 445 KAASVVDRGHDKLSTWGIGKEKSHEFWLSIIRQIIHLGFASQDITRGSAIKLNPQARAVL 504

Query: 480 RGEAQVTLRE---SVSSPAERSKSRREKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVA 536
           +GE  + L E   S+++  +R  S R      AP        +  +K F  LK  R  +A
Sbjct: 505 KGELPLQLAEPRISITTHVKRRSSSR------API-------NYDRKLFARLKQLRRSLA 551

Query: 537 KEHNLPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAYGSEVL 585
           +E ++P Y++F+DATLA +A   P +  ++  ++G+G  KL  +G E L
Sbjct: 552 EELDVPPYLVFNDATLAEMAAMLPTSPGEMLAVNGVGETKLNRFGGEFL 600