Pairwise Alignments

Query, 591 a.a., ATP-dependent DNA helicase RecQ from Variovorax sp. SCN45

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  480 bits (1235), Expect = e-140
 Identities = 268/592 (45%), Positives = 385/592 (65%), Gaps = 26/592 (4%)

Query: 1   VVGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAIVVSPLIALMHDQVGALHEAGVSA 60
           V  G D LV+MPTGGGKSLCYQ+PA+      HG+ IVVSPLI+LM DQV +L + GV+A
Sbjct: 37  VCRGEDCLVIMPTGGGKSLCYQLPALMM----HGITIVVSPLISLMKDQVDSLLQTGVNA 92

Query: 61  AFLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEA 120
           A+LNS+   E + +V R++  GE+ LLY +PER+ T  F+ ++ SL     LS+FAIDEA
Sbjct: 93  AYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFIERMQSLP----LSMFAIDEA 148

Query: 121 HCVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADDLTRADIVERLQLEEARQFVSSF 180
           HC+SQWGHDFRPEY AL  L + +  VP +ALTATAD  TR +I ERL +   +  +SSF
Sbjct: 149 HCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICERLGINPFK-LLSSF 207

Query: 181 DRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYH 240
           DRPNIRYT+ EK +A  QL +F+ +++ G +G++YC SR+RV++VA  L   G +A  YH
Sbjct: 208 DRPNIRYTVAEKLNAANQLRQFLLQQN-GSSGIIYCSSRRRVDEVAERLTLQGFHAKAYH 266

Query: 241 AGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRA 300
           AG+    R + QD FL+++  ++VAT+AFGMGI+K +VRFV H D+PK+IE YYQETGRA
Sbjct: 267 AGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRA 326

Query: 301 GRDGGPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLL 360
           GRDG  A+A+M +   D+   R +I++S  G + +QV   KL+ + + AEA  CRR  LL
Sbjct: 327 GRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQ-QQVEFHKLNTMAAFAEAQTCRRQVLL 385

Query: 361 GYFGEKS-TPCGNCDNCLNPPQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGK 419
            YF E +  PCGNCD CL+PP+ ++G++ A+K+LS IYR+    G  FG  H++++LRG 
Sbjct: 386 HYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRL----GQRFGINHLIEVLRGS 441

Query: 420 ATEKVKQFGHERVSTFGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVL 479
               +   GH+++ST+GIG + S      V+RQLI  G  + D    +++ L   +R +L
Sbjct: 442 KGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGSSITLNPSARPIL 501

Query: 480 RGEAQVTLRESVSSPAERSKSRREKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVAKEH 539
           +GE  + L E    P  +  S + KT +   S      D   +K F  LK  R E+A+E 
Sbjct: 502 KGEVALMLAE----PRIQLTSIKRKTTQ---SRVPLNYD---RKLFARLKTLRREIAEEQ 551

Query: 540 NLPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAYGSEVLRVCEAF 591
           ++P Y++F+DATLA +A   P +  ++  ++G+G +KL  +G E L    A+
Sbjct: 552 DVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLDEIAAY 603