Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (327), Expect = 2e-35
 Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 4/220 (1%)

Query: 1   MDLDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYV 60
           M  DF  + +  P LL+    T+E+ +  L    +L L +   R+  K   +      Y+
Sbjct: 1   MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVF-KVPVLDPLSQLYI 59

Query: 61  AAIRGTPLLVQLFILFFGLPH-FGIL--LPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDK 117
           +  RGTPLLVQLF+L++GLP  F +L  L AF   V+GL ++  AY++E +R AI  ID+
Sbjct: 60  SFFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDR 119

Query: 118 GQTMAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQ 177
            Q  A+ S+GMT   AMR+I+LPQA    +P L N FI +IK+++L   L + ++M + Q
Sbjct: 120 SQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQ 179

Query: 178 KIISVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQKLRQ 217
              S S+R  E +LA+A++Y+V+   +T +    EQKL +
Sbjct: 180 MEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNK 219