Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 227 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  140 bits (354), Expect = 2e-38
 Identities = 76/205 (37%), Positives = 122/205 (59%), Gaps = 5/205 (2%)

Query: 13  PDLLRGALVTVEITACALALGCVLGLLVGIGRLNP--KRRWIYGACTAYVAAIRGTPLLV 70
           P +LRG  VTV   +   ALG V G  + + R  P    RW+     AY+  IRGTP L+
Sbjct: 13  PSILRGFGVTVLCWSAGCALGIVFGFALALLRRLPFAPLRWVV---RAYIEVIRGTPFLI 69

Query: 71  QLFILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQTMAAQSLGMTP 130
           QLF+L+ G P  G+ L A   G+LGLG+Y  AY +EI RG  +++ KG   A +SL M+P
Sbjct: 70  QLFLLYSGGPFIGLRLEATTAGILGLGIYGSAYFAEIFRGGFEAVPKGYVEAGESLSMSP 129

Query: 131 GVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKIISVSYRSLEVY 190
            V +R+IV+P  +V ++P + N  I L K + ++S++T+ ++M+E Q + + ++   EV 
Sbjct: 130 LVILRRIVVPTMLVAILPAIVNMMIILTKETVVLSIITVPELMYEMQTMAAETFAVFEVI 189

Query: 191 LAIAVVYFVLTGTMTLILRHFEQKL 215
             +A+ Y++L   ++ + R  E +L
Sbjct: 190 FGLALFYWLLVEVVSRLGRRVEARL 214