Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis JJ

 Score =  149 bits (375), Expect = 5e-41
 Identities = 84/213 (39%), Positives = 125/213 (58%)

Query: 3   LDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYVAA 62
           + F  V+   P ++    VT++IT  +  L  ++ +LVG  R     + +     AYV  
Sbjct: 1   MKFYIVFDNIPFIIDAVFVTLKITIMSFLLSVIIAVLVGSIRAMNFSKTLDLVLMAYVEV 60

Query: 63  IRGTPLLVQLFILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQTMA 122
            RGTPLL+QLF +++GLP  GI +      VLGL +  GAY+SEI+R AIQS+  GQ  A
Sbjct: 61  FRGTPLLIQLFFIYYGLPSVGITMSGTFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFEA 120

Query: 123 AQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKIISV 182
           A+SLGM    +M  IVLPQA    IPPL N F +++K S+L+S+L I ++   GQ I + 
Sbjct: 121 AESLGMGKIESMVYIVLPQAFRITIPPLVNSFSSILKESSLISVLAITELTRIGQLIYTR 180

Query: 183 SYRSLEVYLAIAVVYFVLTGTMTLILRHFEQKL 215
           + R  E+YL I ++Y +L   +++     E+KL
Sbjct: 181 TSRPFEIYLTIGLIYLLLVSIISISSWKIEKKL 213