Pairwise Alignments

Query, 623 a.a., T6SS component TssF (ImpG/VasA) from Variovorax sp. SCN45

Subject, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

 Score =  240 bits (613), Expect = 1e-67
 Identities = 183/626 (29%), Positives = 298/626 (47%), Gaps = 52/626 (8%)

Query: 8   YYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARIQLKMDAE 67
           Y+  EL ++ E G EF + +P+++  L  R    +DP VERLLEGF+FLTAR++ K++ E
Sbjct: 6   YFREELAFLKEQGKEFTEIHPQLSRFLHGR---TTDPDVERLLEGFAFLTARLREKVEDE 62

Query: 68  FPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTILRGRMIKGEQTA 127
           FP  +  ++ +++PN+L P+P+M+VV  +    + S+     +PR+T L  + + G  TA
Sbjct: 63  FPELTHSIINMLWPNYLRPIPSMSVVAFE---PDKSVSEKQVIPRNTQLDSKPVFG--TA 117

Query: 128 CEFRTGHAVTLWPVRIADAGIGPVPAEIAHAMPAVARQAKSALTIRIEAVGGARFSEMPI 187
           C F T   V L+P++                + A   +  + + I +  +G     +  +
Sbjct: 118 CHFNTCRDVALYPMQ-------------CQGVHAEHTREATTIQISLRMLGDMTVGDAKL 164

Query: 188 ERLEFFLSGAELHALRVLELVAHHAVGTVCRSGPGGNARIVPLGDDAIRHEGFSPDQALL 247
           + + F+L G + ++ + L L  HH +  +     G       L  DA    GFS DQALL
Sbjct: 165 DTVRFYL-GGDKYSSQTLYLWLHHYLQKMTIEVQGVE---FALPADAFSTVGFSSDQALL 220

Query: 248 PYDARSFQGYRLLHEYFAFPDRYLFFSVNKL-RAAAQAMSGSTMEIVILLDRADADLERL 306
           PY    + GYR+L EY +FP+ + FF V    +A  +A+SG     +       AD    
Sbjct: 221 PYPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADTR-- 278

Query: 307 VDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFTVERVTGHMANG 366
           V   +F L+CTP+INL    +D I +   + E+  V     P  +EIF+V++V G     
Sbjct: 279 VRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQ 338

Query: 367 SEEREFRPFLGSFAADDGDFGAYFSLRREPRLVSDR-ARAQGTRTSYT----GSEVYVSL 421
           SE +  R        +   + ++ S + E   V  R A    TR   +    G + ++S 
Sbjct: 339 SEGKRIR-------GEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISF 391

Query: 422 VDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRVSAPVRSIRILRGPSRPYP 481
           V   +         +++   CTNR LPL L  G +       S P  + + +  PS+   
Sbjct: 392 VRGDETLSMGVDEAVSIKLTCTNRLLPLELGVG-DICVATDSSPPFATFKNITVPSQSLR 450

Query: 482 ALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLADPSVRRQIQGVRSMA 541
            + +G+L W LIS+L LNYLSL   DA        +   L    A+   R ++ G+  + 
Sbjct: 451 PVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIE 510

Query: 542 LAPV---FRRLPEPGPIVFGRGVEIALKIDEVAF-SGASPYLFGAVLEQFFSRHVSLNAF 597
             PV    R LP        RG++  L +D+  F S    +LFG VL  FF+ + S+N+F
Sbjct: 511 SKPVDKILRGLPV-------RGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSF 563

Query: 598 TEFALSSLQRGEIARWTPRVGRRPAV 623
            E  + ++   E   W  + G +P +
Sbjct: 564 HELVVVNISNQEKYSWGTQSGMQPLI 589