Pairwise Alignments

Query, 906 a.a., T6SS AAA+ chaperone ClpV (TssH) from Variovorax sp. SCN45

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  633 bits (1633), Expect = 0.0
 Identities = 380/905 (41%), Positives = 533/905 (58%), Gaps = 49/905 (5%)

Query: 1   MTDIRRVSLFSKLNPMLYKALETATAFAKLRGNAYVELVHWLHQILQLQDSDMLRIIKRA 60
           M  I   +L +KLN     ALE A +    R +  V L ++L  +L    SD+  ++K+A
Sbjct: 1   MIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQA 60

Query: 61  GLNLDAVENDLVRALDRLPHGATSISDISEHVDNAVERAWVYASLRFEATSIR-GAYLLA 119
           GL +D V+  +     R      +    S  +   ++ AW+ +S   E   +R GA  LA
Sbjct: 61  GLEVDQVKQAIASTYSR-EQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLA 119

Query: 120 GIIKTPGLRQVLSGISREFDKIVPDVLVAQLAAWTEGSPEDDHDVAAAPGVPAVASANAH 179
            + +    R +   +   F+ I  + L    A     S E            AVA  + +
Sbjct: 120 ALTRAD--RYLSFKLISLFEGINRENLKKHFAMILSDSAET-----------AVAKTDKN 166

Query: 180 QGDGAPAGGSA-LAKYASDLTAKARAGELDPVYGRDDEIRQIIDILMRRRQNNPLLTGEA 238
             +   A     L ++ +++T +AR GELDPV  R++E+  ++DIL RRR+NNP++ GEA
Sbjct: 167 AANPLQAAAETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEA 226

Query: 239 GVGKTAVVEGLASRLAAGDVPPSLKDVSLWVLDPTLLQAGAGVKGEFEQRLRQVIDEVEK 298
           GVGK+A++EGLA R+ AG VP  L++V L+ LD   LQAGA VKGEFE+RL+ VID +++
Sbjct: 227 GVGKSAMIEGLALRVVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQ 286

Query: 299 SPKPIVLFVDEVHTLVGAGGTAGTGDAANLLKPALARGRLRTIGATTWSEYKKYIEKDPA 358
           SPKPI+LF+DE HTL+G+G   G  DAANLLKPALARG L T+ ATTW EYKKY EKDPA
Sbjct: 287 SPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPA 346

Query: 359 LTRRFQTIQVHEPTEPKAVVMLRGISAELEKHHGVLILDAALEAAVSLSHRYIPARQLPD 418
           LTRRFQ +++ EPT  +AV +LRG+++  EK H VLI D AL+AA  LS RYI  RQLPD
Sbjct: 347 LTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPD 406

Query: 419 KAVSLLDTACARVALSQHALP---AAIEDL--QRRIEVLGIE-SGIAGREAAIGVGEHQR 472
           KA+ +LDTACAR+A++    P   A +E L  QR++E+  +E +   G+E      + +R
Sbjct: 407 KAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEV-----DSER 461

Query: 473 VEDIAAQVAEAQAELELLETRRVEESALVERIVALRKQLSPAAVPQAGADDDAKSQDAQA 532
           ++ +  Q    +AE   L     ++ +LVE I+ALR +L                + +QA
Sbjct: 462 LDVLRNQELADEAEKAALTQSWQQQKSLVESIIALRAEL---------------MELSQA 506

Query: 533 SDTDPAKTAEEIRAELAQAQDRLVQLQGESPLILAAVDAQAIATVVADWTGIPIGRMVRD 592
            + DP      +R  L +    L  +     L+   VDA  IA V+ADWTG+P+ +M  D
Sbjct: 507 QEQDPDHLL-VVRTALQEQYQALDAIDHAERLMHPQVDADQIAEVIADWTGVPVDQMNTD 565

Query: 593 DAQSVLKLGEILSARVVAQPDALETISRRIRTARARLDNPNKPVGVFLLCGPSGVGKTET 652
           +   +  L  IL   +  Q  A+E I R + TARA L  P +P G FLL GPSGVGKTET
Sbjct: 566 ELHKITHLTSILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTET 625

Query: 653 ALALSEALYGGEQNLVTINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVV 712
            + L+E LYGG+Q L TINMSE+QE HTVS L G+PPGYVGYGEGGVLTEA+R+ PYSVV
Sbjct: 626 VVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVV 685

Query: 713 LLDEIEKAHTDVHEIFFQVFDKGWMEDGEGRHIDFRNTVIIMTSNVGTDLVMQLCEDPDL 772
           LLDE+EKAH +V  IF+Q FDKG + DGEGR ID +N V  +TSN+G   ++      D 
Sbjct: 686 LLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDCQNIVFFLTSNLGYQTIV------DY 739

Query: 773 RPDPEPLANALREPLLKVFAPALLGRLVVVPYYPLHAQALHRIIRLQLDRIAARLAANHG 832
             +P  L  AL   L   F PALL R+ V+PY PL  + L +I+R +L R+       + 
Sbjct: 740 ADEPAKLDEALYPELAAFFKPALLARMEVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYN 799

Query: 833 ITLVYDDSAVELVARRCTAIESGGRMIDAILTHTILPRLSEEVIGATVSARKLAGVRLSA 892
             +V ++S ++ +  R T  E+G RM++AI+   +LP +S  ++        +  +RL+A
Sbjct: 800 AEVVIEESLIDEILSRATRSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAA 859

Query: 893 EGDDF 897
           E  +F
Sbjct: 860 EAGEF 864