Pairwise Alignments

Query, 456 a.a., T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain from Variovorax sp. SCN45

Subject, 308 a.a., sodium-driven polar flagellar protein PomB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (249), Expect = 7e-26
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 281 NAVRLPQTARAVVMPAPTPRLQRFLEPEIRDGLLTVRDEADRSVVVLRGDGLFASGSDRV 340
           +AV+    A    +     ++ + L  EI DG + +     + ++ +R  G FASGS  +
Sbjct: 135 DAVKAEAAAAQDKINQQVKKMAQELNQEIADGAIEIESLGQQIIIRIREKGSFASGSGFL 194

Query: 341 LDRYAPVLARVADALNAVEGNVLISGFSDDQPIRSVRFPSNWQLSQARADAVKK-MIATR 399
             R+ PV+  V + L  V G + +SG++DD  I    + SNW LS  RA AV   ++  +
Sbjct: 195 QPRFKPVVRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVK 254

Query: 400 LARPERLRAEGRGDADPLVPNDSPANRARNRRVEVTL 436
              P+R++  G    +P+VPNDSP NRARNRRVE+ +
Sbjct: 255 GFDPKRMKVVGMASNNPIVPNDSPDNRARNRRVEIAI 291