Pairwise Alignments

Query, 1219 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  338 bits (868), Expect = 1e-96
 Identities = 314/1231 (25%), Positives = 531/1231 (43%), Gaps = 113/1231 (9%)

Query: 16   VFLGLVALAFLIWIIGPAIAVGRYRPLEDEIVRIAVIALMFAIWLARLVYRKWRERRLNA 75
            +F   + L   IW  GP + V  Y+PLE  + R+   +L     LA  V+  W+ R+L A
Sbjct: 24   LFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLA--VWGIWQWRKLQA 81

Query: 76   QLLNQLRTPSKKEKEAKPEDAPEIKELQSGFTDATAILKNMRFGQGADGKPASRFSVFDR 135
                  ++  K+E++ + +     ++ Q    +   ++ NM+             S+   
Sbjct: 82   -----FKSEQKREEQLRQDPIKVYEQRQE--VELNQVMLNMKQ------------SLNKH 122

Query: 136  QYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIGGTRNCDWWFTNEAVL 195
             YLY LPWY+ +G   +GKT+ +  S  +F  +  + +A+ +      + DWW  +E+VL
Sbjct: 123  NYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVM-RASGQKSENPYSFDWWIGDESVL 181

Query: 196  IDTAGRYTTHESNRETDEGE-----WKGFLELLKKFRPRQPINGAILTISIADLPLADDA 250
            ID  G   T  +  E ++G      W  F++ L + R R+P+NG +L + +A L  A  +
Sbjct: 182  IDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATAS 241

Query: 251  QRARHAMALRKRLLELRNDLGIDFPVYVLVTKTDLLAGFNEYFGSLGRAERQQVWGFTFP 310
            +R  +A  LR RL EL   L    PVY+ +TK DLL GF  +F    +++R++V GFTF 
Sbjct: 242  ERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFS 301

Query: 311  IEGNAANKAAKGAAPLKGGDLRERFHQEYRLLHQRLDERLPELLAAEPDPMRRAQAYLLP 370
            ++ +  N               E F  EY     R++  LP  +AA      R   Y   
Sbjct: 302  MD-SVDNL----------DSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFT 350

Query: 371  QQFASFEDILGTFLADVFNPSKFEAASMLRGVYFTSGTQEG---TAFDRVMGAIKRY-LQ 426
            +Q +  ++IL  F  +     +F  ++++RG YFTS  Q+G    AFD    A +RY L 
Sbjct: 351  RQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDD--AASRRYGLS 408

Query: 427  VNAPPAPPPGPGKSYFLKELLQQVIFRDAGVAGTNLRWYRRKRAIDIAGYSVIGVLLVLF 486
                 A        YF ++L   +I+ +AG+A  N R  + KR +    +    V  +L 
Sbjct: 409  HAINTAQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLL 468

Query: 487  LGACVNSWRNNKDY----VAEVDGNAKAFNKAAARGELPTVVDSGGDIASSLLILDRLRD 542
             G    ++ NN  +    + +V+   + F  + +      V+D    I  + L     RD
Sbjct: 469  AGTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRD 528

Query: 543  LPKSSHFDVSDPPLSYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQSLREASKN 602
             P+     +SD      FGLYQG  +    +  Y   LET  LP        +L +A  +
Sbjct: 529  KPQY----ISD------FGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAETD 578

Query: 603  DAEYSYEALKAYLMLFDAERYDADFLQAWLLSDVDRKIGASLTREQRTNLESHLKALFAG 662
            + + +   L+ Y ML D      D++  +      +       R+ +  L  HL      
Sbjct: 579  EEKLA--VLRVYRMLVDKSGRYQDYVMDYFAKYWQKSFSGQ--RQIQEELLGHLDYAMRH 634

Query: 663  RVLTSP-----------FAKDERLITQTRERLAGVPLAQRSYARLRRILLQTSPPNAFSI 711
              LT+                +++I + +  L  +P  QR Y  L ++  QT    + ++
Sbjct: 635  TDLTAERLNGDKGAEQVMRPYDKVIARAQVELGSMPNDQRVYRNL-KLSAQTVLGPSVNL 693

Query: 712  AEAGGAESALVIRRASGKPLTDGIPTLFTYRGYWDIFDKRMAETTLSLEQEDRWVLQIRA 771
                G    +V         +  IP + T RG+ D F    +E+   L   D WVL    
Sbjct: 694  RSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYF-MPQSESVSELALIDSWVLGQSK 752

Query: 772  PGIADITSRELLLREVRRLYLTDYIRVWDEYLTDIRLADSRSLLQSIQMTRVLSTSESPM 831
                    ++ L  ++R LY+ DY   W   L +I +     +  ++ +   ++++  PM
Sbjct: 753  TAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPM 812

Query: 832  SRIIRGAARETDL---LRNHDEAARGLLDQAQNRVASTRER-IEQLIGQPDGSQRRNARV 887
             R++R     T L   L   + A + LL   + +VAS  E     L G       + A +
Sbjct: 813  QRLLRTLDDNTQLYSALPKDESALKELLKSPKYKVASMIETPFADLNGMLKPVGSKPAYM 872

Query: 888  DRPESLVDNHFEPLRRMVTAPKQGGQAPIDATAALINELYTFLTATDTALRSGNIPPSSD 947
                + VD     L+ +  AP   G A +DAT A +  +                  ++D
Sbjct: 873  TEVLASVDELKSYLKSIQDAP-DVGMAALDATKARVKLV------------------NAD 913

Query: 948  AVTKVQAEAGRLPVPFQGMLNDLSATASSKAAAVTRQNIGQSAAASIGSFCNQAIAGRYP 1007
             +  ++  +  LP P   M+  L+  +         +++       +       +AGRYP
Sbjct: 914  PIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYP 973

Query: 1008 FSRGSNRDVASGDFAQLFAPGGMMDDFFQKNLITQVDTSVNPWAFKRGVDGSAAG--RSA 1065
            F+  SN+DVA  DF   FAP G +D+F+ + L   +D +++        D SA    R  
Sbjct: 974  FNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISV-----ASDDSAQSIIRKE 1028

Query: 1066 YLDSFQKAQAIRDVFFSGMAGGRTPSFTLDIRPEDMDAALTQFTLDIDGQTVRYAHGPQA 1125
             LD  ++AQ IR+ FF+   G    SF+  + P  +     +  L++DGQ + Y+HGP+ 
Sbjct: 1029 VLDQIKQAQKIREAFFN-RKGILDVSFS--VEPLSLSNNKRRSVLNVDGQFLAYSHGPRE 1085

Query: 1126 PSTVKWPGP-RNS--NQVRLQVTTANGTPAGGIVTEGPWALHRLFDKASISSGSSPESFN 1182
               + WP   R+S  ++V L  T  N +P   +  +GPWA  RL D+  + S +S  S +
Sbjct: 1086 NVELIWPNTLRDSAVSKVTLIPTQTNMSPR-SLQIQGPWAFFRLLDQGDVVS-ASQTSVD 1143

Query: 1183 ATFDLQGKKVVLAVTANSVYNPLRLPQMNSF 1213
              F + G +++  + A +  NP       SF
Sbjct: 1144 FKFIVDGGEMIYRINAEADANPFTERLFKSF 1174