Pairwise Alignments

Query, 357 a.a., DNA polymerase III delta subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 342 a.a., DNA polymerase III subunit delta from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (373), Expect = 2e-40
 Identities = 110/349 (31%), Positives = 170/349 (48%), Gaps = 22/349 (6%)

Query: 1   MQLASASLGAHLQKGLKPLYTIHGDEPLLAQEAADAIRTAARAQGYTERSSYTVAGAHFD 60
           M++ +  L   L K L P+Y + G+EPLL QEA  AI   A+AQG+ E+  ++ A A  D
Sbjct: 1   MRIYAEKLAESLHKTLYPIYLVFGNEPLLLQEAKTAIEKTAQAQGFLEKHRFS-ADAGLD 59

Query: 61  WSAVLAAGGSLSLFADKQIVEIRIP----SGKPGKDGSAALQQLAESAPGNDSTLTLVML 116
           W+AV     +LSLF+ +Q++EI IP    + +  K+ SA + QL      +   L LV+ 
Sbjct: 60  WNAVYDCCQALSLFSSRQLIEIEIPESGVNAQTAKELSALVGQL------HQDILLLVIG 113

Query: 117 PRLDKATRTGAWFSALENNGASIQVDPIERNALPQWIAQRLGQQGQRVMPGDEGQRTLQF 176
           P+L KA    AWF  L      +     E + LPQ++ QR    G  + P  E    +Q 
Sbjct: 114 PKLTKAQENAAWFKTLAQQACWVNCLTPELSRLPQFVQQRCFALG--LKPDAE---AVQM 168

Query: 177 FADRVEGNLLAAHQEIQKLALLHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRV 236
            A   EGNL A  Q ++KLALL+P G L+  ++E +++    +  +   +A+L G   R 
Sbjct: 169 LAQWHEGNLFALAQSLEKLALLYPDGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRA 228

Query: 237 ARMLDGLQAEGEAEVLVHYTIAEDIRALKRVKDAMASGRPLPMALRENRIWGPRERAFER 296
            R+L  L  E    +++  T  +++  L + +        L       R+W  R   +  
Sbjct: 229 QRILRQLMLEESEPIILIRTAQKELTQLLKWQQERQQLGNLGSLFDRYRVWQNRRPLYSA 288

Query: 297 VLPRLDDRMLTRLLRAAHVVDGIVK-GLKQPDWPASGWQALQRLALMLC 344
            L RL  R L RL+      + + K   +QP WP      LQ+L+L  C
Sbjct: 289 ALQRLPSRALLRLVGILTQAELLAKTQYEQPVWP-----ILQQLSLECC 332