Pairwise Alignments

Query, 264 a.a., Lipopolysaccharide ABC transporter, ATP-binding protein LptB from Variovorax sp. SCN45

Subject, 255 a.a., ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  152 bits (384), Expect = 7e-42
 Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%)

Query: 18  LVARGLKKSYGSRTVVKDVSLDVQKGEVVGLLGPNGAGKTTSFYMIVGLVRADAGDITID 77
           L    L   +G    V  V+L V++ +VV L+GPNGAGKTT F  + G  +   G I +D
Sbjct: 6   LKVENLSMRFGGLLAVNGVALTVKEKQVVALIGPNGAGKTTVFNCLTGFYQPTGGTILLD 65

Query: 78  GEPIAHMPIHRRARMGLSYLPQEASIFRKLTVEENVRAVLELQQEPDASGKLMPLSKQHM 137
           GEPI  +P H  AR G+    Q   +F+ +T  EN+          +    L        
Sbjct: 66  GEPIQGLPGHHIARKGVVRTFQNVRLFKDMTAVENLLIAQHRHLNTNFFAGLFKTPAFRK 125

Query: 138 EERLSELLADLRVDHLR-----DSPALALSGGERRRVEIARALATQPRFILLDEPFAGID 192
            ER +   A+  +D +      + PA  L+ G++RR+EIAR + T+PR ++LDEP AG++
Sbjct: 126 SEREAMEYAEYWLDKVNLTEFANRPAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGLN 185

Query: 193 PIAVIEIQRIISFLK-ERGIGVLITDHNVRETLGICDHAFIISDGHVLAQGTPSEIVDNA 251
           P    +++ +I  L+ E  + VL+ +H+++  + I DH  +I+ G  LA GTP +I DN 
Sbjct: 186 PKETEDLKALIGVLREEHNVTVLLIEHDMKLVMSISDHIVVINQGTPLADGTPEQIRDNP 245

Query: 252 EVRRVYLGE 260
           EV + YLGE
Sbjct: 246 EVIKAYLGE 254