Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  352 bits (902), Expect = e-101
 Identities = 222/537 (41%), Positives = 313/537 (58%), Gaps = 40/537 (7%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60
           MK  L L++ Q L +TPQLQQ+IRLLQLSTL+L QE+++ LD NP LER       EE G
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLER-------EEDG 53

Query: 61  LDAVDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADS-DGPAAEIAEREPDWEGD 119
            D   +    D +AEA +    P    T  +S++ ST    S  G +A+    + DW G+
Sbjct: 54  DDFDSS----DPMAEAAD---RPGDTGTEKSSSQESTYEEPSHSGESAD----DGDW-GE 101

Query: 120 GTVDMAPDDSEWGSDAPARQNNL--GDDERADATELARSQESLQSFLHRQALSLRLSEND 177
                 P D+ W        ++L   DD+  D T    +  SLQS L  Q     +S+ D
Sbjct: 102 RIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTSRTSNGISLQSHLLWQLNLAPMSDTD 161

Query: 178 SAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGA 237
                 LI+ +ND GYLE++L  +      +   + D++    +V L  +Q  EP G+GA
Sbjct: 162 RLIATTLIDCINDQGYLEETLQEIVDSFDPELEIELDEV----EVVLRRIQQFEPAGIGA 217

Query: 238 RDLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSNE 297
           RDL ECL +QLR L+         +R      A  +    +++L  RD+  L    +  E
Sbjct: 218 RDLRECLLLQLRQLS---------ERTPWLSEAQRLVSDYLDILGSRDYSLLMRRMKLKE 268

Query: 298 ELVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRV 357
           + +R  +++I  L P+PG +    E   V+PDVIV K     N ++ V LN E MPRLRV
Sbjct: 269 DELRQVIELIQSLNPRPGSQIEASEPEYVVPDVIVRKH----NDRWLVELNQEAMPRLRV 324

Query: 358 HDIYAGALKSHKGEGSQA-LSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHGE 416
           +  YAG +K          +  +LQEARWFIK++  R +T+++V+  IVE Q+++  HG+
Sbjct: 325 NAQYAGFVKRADSSADNTFMRNQLQEARWFIKSLLSRNETLMKVATQIVEHQRAFLEHGD 384

Query: 417 LAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTA 476
            AM+PLVL +IA+ +G+HESTISRVTT KYM TP G  ELKYFF S + T  GG  SSTA
Sbjct: 385 EAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVSTAEGGECSSTA 444

Query: 477 VRALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL 533
           +RA+IK+ V++E+ KKPLSDS+I+ +L+ QGI+ ARRTVAKYRE+L IAP++ RK L
Sbjct: 445 IRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRL 501