Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

 Score =  316 bits (810), Expect = 1e-90
 Identities = 205/542 (37%), Positives = 303/542 (55%), Gaps = 65/542 (11%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60
           MK  L L++ Q LA+TPQLQQ+IRLLQLSTL+L QE+++ L+ NP LE   EE   E   
Sbjct: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLE--VEENQDEAPS 58

Query: 61  LDAV----DTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDW 116
           LD+V    ++P + +E+ E        P    S+   E S  +A+         E +  W
Sbjct: 59  LDSVRMTEESPREPEELYE--------PEPQDSSDLIEKSEISAE--------LEMDTTW 102

Query: 117 E-----GDGTVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSL 171
           +       G+  +A DD     DAP  Q                + ++LQ +LH Q    
Sbjct: 103 DEVYSANTGSTGLALDD-----DAPIYQGE--------------TTQTLQDYLHWQLDLT 143

Query: 172 RLSENDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLE 231
             S+ D      LI++++D GYL  SL  +   L  DD +     +   +     +Q  +
Sbjct: 144 PFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLRSDDIE-----LDEIEAVRKRIQQFD 198

Query: 232 PVGVGARDLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLAT 291
           P GV + +L +CL +QL     +    EE         A  +  Q ++ L  RD+K +  
Sbjct: 199 PFGVASLNLQDCLLLQLTTYPCDTPWLEE---------ARLLLSQYIDDLGNRDYKTILK 249

Query: 292 LTRSNEELVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEV 351
            T+  EE +R  LQ+I +L+P+PG R        VIPDV V K       ++ V +NP+ 
Sbjct: 250 ETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKE----QGRWLVTINPDS 305

Query: 352 MPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSY 411
           +P+L+++  YA  ++ +  E S  +   LQEA+W IK+++ R +T+L+V+  IVE Q  +
Sbjct: 306 VPKLKINQQYADLMRGNNAE-SNYIRTNLQEAKWLIKSLESRNETLLKVAKCIVEHQHDF 364

Query: 412 FVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGN 471
           F +GE AM+P+VL ++A  + +HESTISRVTT KYM TP G  ELKYFF S + T+ GG 
Sbjct: 365 FEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTDNGGE 424

Query: 472 ASSTAVRALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRK 531
            SSTA+RALIK+ V++E+  KPLSDS+I+ +L +QGI+ ARRT+AKYRE+L IAP++ RK
Sbjct: 425 CSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGIAPSSQRK 484

Query: 532 AL 533
            L
Sbjct: 485 RL 486