Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 511 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Pseudomonas syringae pv. syringae B728a

 Score =  336 bits (862), Expect = 1e-96
 Identities = 212/534 (39%), Positives = 308/534 (57%), Gaps = 39/534 (7%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60
           MK  L LR+ Q L +TPQLQQ+IRLLQLSTL+L QE+++ L+ NP LER       +E G
Sbjct: 15  MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLER-------QEEG 67

Query: 61  LDAVDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDWEGDG 120
            D   +    D + +    D   P+   S  + +             E  ER P+   + 
Sbjct: 68  DDFDHSDPLADNIEQKPNPDVQEPTYQESAPTVDNLEEG--------EWNERIPN---EL 116

Query: 121 TVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSLRLSENDSAA 180
            VD A +D    S +    N   DD+  D T      ESLQS L  Q     +S+ D   
Sbjct: 117 PVDTAWEDIYQTSASSLPSN---DDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLV 173

Query: 181 LRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGARDL 240
              LI+ +N+ GYL+++L  +      + + + D++    +  L  +Q  EP G+GAR+L
Sbjct: 174 AVTLIDCINNQGYLDETLDEILESFDPELDIELDEI----EAVLHRIQQFEPAGIGARNL 229

Query: 241 GECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSNEELV 300
            ECL +QLR L A+     E  R         +    ++LL  RD+ +L    +  E+ +
Sbjct: 230 SECLLLQLRQLPAKTPWLTEAQR---------LVSDYIDLLGSRDYGQLMRRMKLKEDEL 280

Query: 301 RLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVHDI 360
           R  ++++  L P+PG +    E   VIPDVIV K     N ++ V LN E +PRLRV+  
Sbjct: 281 RQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRKD----NERWLVELNQESVPRLRVNPQ 336

Query: 361 YAGALK-SHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHGELAM 419
           YAG ++ +     +  +  +LQEARWFIK++Q R +T+++V+  IVE Q+ +  +G+ AM
Sbjct: 337 YAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAM 396

Query: 420 RPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAVRA 479
           +PLVL +IA+ +G+HESTISRVTT K+M TP G  ELKYFF S + T  GG  SSTA+RA
Sbjct: 397 KPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRA 456

Query: 480 LIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL 533
           +IK+ V++E+ KKPLSDS+I+ +L+ QGI+ ARRTVAKYRE+L IAP++ RK L
Sbjct: 457 IIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRL 510