Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  268 bits (686), Expect = 3e-76
 Identities = 199/541 (36%), Positives = 287/541 (53%), Gaps = 52/541 (9%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLE-RTAEEAA---R 56
           +   L LR SQ L +TPQL QSI+LLQ++ LELS  + Q +++NP LE + A+E     R
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 57  EEFGLDAVDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDW 116
           E+ G    +T  + DE A  G+ D    + S S            S+G  A+ A   PD 
Sbjct: 63  EDAGPHPAETGGETDEAA--GQSDLYDSAMSRSGERL--------SEGLDADFANVFPDD 112

Query: 117 EGDGTVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSLRLSEN 176
                 D      +W S   A     GD E  D  +    +++L+  L  Q      + +
Sbjct: 113 TAPQRADAPELLGQWKSMPGA-----GDAEGYDLDDFVGGRKTLRETLAEQLPFALSAVS 167

Query: 177 DSAALRFLIESLNDDGYLEDSLPALAS--GLAGDDNDQFDDLVHHFQVALGLLQSLEPVG 234
           D    R+ I+ L+D GYL   L   A   G AG+D  +           L +LQ  +P G
Sbjct: 168 DRLIARYFIDQLDDAGYLHADLAETAETLGAAGEDVAR----------VLHVLQQFDPPG 217

Query: 235 VGARDLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTR 294
           V AR LGECL+IQLRA    D              A+      +ELLARRDF  L  +  
Sbjct: 218 VFARTLGECLAIQLRARNRLDP-------------AMEALVANLELLARRDFASLKKICG 264

Query: 295 SNEELVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPR 354
            +EE +   L  I +L+PKPG  F       +IPDV+V     G    + V LNP+ +PR
Sbjct: 265 VDEEDLIDMLAEIRKLDPKPGTSFETGVFEAIIPDVVVRAAPDGG---WLVELNPDALPR 321

Query: 355 LRV-HDIYAGALKS-HKGEGSQA-LSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSY 411
           + V HD +    +S  K  G QA L++ LQ A W  +++ QR  TI++V++ IV +Q ++
Sbjct: 322 VLVNHDYFTEISRSSRKNSGEQAFLNECLQNANWLTRSLDQRARTIMKVASEIVRQQDAF 381

Query: 412 FVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGN 471
            +HG   +RPL LR +AD + +HEST+SRVT+ KYM TP G  ELKYFF  ++G+   G+
Sbjct: 382 LIHGVGHLRPLNLRIVADAIKMHESTVSRVTSNKYMLTPRGLFELKYFFTVSIGSAENGD 441

Query: 472 A-SSTAVRALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLR 530
           A S+ +VR  I+  ++ ES    LSD  I ++LK+ G++ ARRTVAKYREA+ I P++++
Sbjct: 442 AHSAESVRHRIRTMINQESADAVLSDDDIVDVLKQAGVDIARRTVAKYREAMSI-PSSVQ 500

Query: 531 K 531
           +
Sbjct: 501 R 501