Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 495 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella loihica PV-4

 Score =  335 bits (860), Expect = 2e-96
 Identities = 206/538 (38%), Positives = 302/538 (56%), Gaps = 48/538 (8%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60
           MK  L L++ QHL +TPQLQQ+IRLLQLS+LEL QE++Q L+ NP LE   E+       
Sbjct: 1   MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQ------- 53

Query: 61  LDAVDTPVQRDEVAEAGEGDFTPP---SASTSTASTETSTTAADSDGPAAEIAEREPDWE 117
            ++    +Q D V ++ +  +       +S   +  ETS        P            
Sbjct: 54  -ESASIELQDDGVTDSFDNKYDDKIELDSSQDNSGVETSDALTQDSMP------------ 100

Query: 118 GDGTVDMAPDDSEWGSDAPARQNNLGDDERADATEL-ARSQESLQSFLHRQALSLRLSEN 176
                D  P D+ W     A  N+     R D       + E L   L  Q      S+N
Sbjct: 101 -----DELPVDTTWDEVYTASPNSSSGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDN 155

Query: 177 DSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVG 236
           D A    +I+++++ GYL  +   +   + GD   + D++    +  L  +Q  +P+GV 
Sbjct: 156 DLAIATAIIDAIDERGYLTQTCEDILEAM-GDPEIELDEV----EAVLKRVQHFDPIGVA 210

Query: 237 ARDLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSN 296
           ARDL ECL+IQL          +  D       A  + K+ ++L+A RDF+ L   T+  
Sbjct: 211 ARDLSECLTIQL---------AQYSDDTPHIANARMLIKEHLDLIAGRDFRLLMRKTKLK 261

Query: 297 EELVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLR 356
           E+ +R A+ +I  L P+PG          VIPDV VTK       ++ V LNP+ MP++ 
Sbjct: 262 EDELRDAIALIQTLNPRPGLAITASRDEYVIPDVTVTKK----KGRWVVELNPDSMPKIN 317

Query: 357 VHDIYAGALKSHKGEGS-QALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHG 415
           V+  YA   +S K +   Q +   LQEA+WF+K+++ R +T+L+V+N IV+ Q+ +F  G
Sbjct: 318 VNQQYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNETLLKVTNCIVDFQQGFFEFG 377

Query: 416 ELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASST 475
           E AM+P+VL +IA+ + +HESTISRVTT KYM TP G  ELKYFF S +GT+ GG  SST
Sbjct: 378 EEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVGTDDGGECSST 437

Query: 476 AVRALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL 533
           A+RA IK+ V++E+ KKPLSDS+++++L EQGI+ ARRT+AKYREA+ I P+N RK+L
Sbjct: 438 AIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKYREAMLIPPSNQRKSL 495