Pairwise Alignments

Query, 597 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  127 bits (319), Expect = 3e-33
 Identities = 119/404 (29%), Positives = 192/404 (47%), Gaps = 44/404 (10%)

Query: 210 ERTLREQALAGLRASEQAQAERLR--FFSAANHDLRQPVMAIGLQAEVLRQQLESGADTH 267
           ER LREQA       + A A R +  F +  +H+LR P+ +I + ++ LRQ      +  
Sbjct: 587 ERRLREQA------DQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLNEK 640

Query: 268 AVQHTVASLARAQQALEGLTNQLLEIGRIEAAVDPLRPEAVALAPLLQE-------LARQ 320
            V+H    + RA   L  L N +L++ +IE+    L+ E + L  +L E       +A Q
Sbjct: 641 QVRHADI-IHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPMAEQ 699

Query: 321 AGNG-RVGVRCPTNAVAWTDTVSLRRVLANLVDNAVKFTPRGRV--LLAVRTRERESGRA 377
            G   ++ V         +D   L+++L NL+ NA+KFT +G V  L + R+ E  SG+ 
Sbjct: 700 KGLLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGSGQT 759

Query: 378 WRIEVRDSGIGIPADAQERVFNDFEQI-GNVERNLQRGHGLGLAIVRRLAAQLGIEVALR 436
            +++VRDSGIGI  D  ER+F  F+QI G++ R+   G GLGLAI R+L   LG +V + 
Sbjct: 760 LQLQVRDSGIGIAKDQHERIFQAFQQIDGSISRH-YGGTGLGLAITRQLVEVLGGQVTVE 818

Query: 437 SAPGRGSVFSFELP-AAPEGAAVARIRPLPQAGTGASHALPSGLAVLVVEDNAVVADSLL 495
           S  G+G+ F+  LP A   GA+   + P      G       G  +L++ED+   A  + 
Sbjct: 819 SELGQGATFTVVLPIATVSGASTQALLPPQPQRRG------RGPGLLIIEDDTDFASVVA 872

Query: 496 ALLRQWGVAPRVYASAAEALALADLHALDAALCDIRLPGALDGIALAERLQ--RQKPSLT 553
            + +  G    +  +  + L         A + DI LP  + G  +   L+   +   + 
Sbjct: 873 EVGQSHGFTSLICNTGEQGLEALRREHFAAVILDILLPD-ISGWQIHRELRGDERHQGMP 931

Query: 554 IVLISADINEATQRLALERGWH-----ALRKPVQPDELHGVLLK 592
           +++IS         +     WH      L KPV   EL  + ++
Sbjct: 932 VIIISC--------VPQPHDWHDDGSRYLVKPVAQSELERIFIE 967