Pairwise Alignments

Query, 323 a.a., Ku domain protein from Variovorax sp. SCN45

Subject, 272 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  133 bits (335), Expect = 4e-36
 Identities = 78/278 (28%), Positives = 155/278 (55%), Gaps = 19/278 (6%)

Query: 10  PRVLWKGAISFGLVHIPVALYSATTD-HGIDFDWLDKRTMDPVGYKRINKKTGKEIAREQ 68
           PR  WKG +   LV  PV++  AT++   + F  L++++ + V  + ++  TGKE+  + 
Sbjct: 4   PRPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKSNNRVVSRYVDAVTGKEVDEDD 63

Query: 69  IVKGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPINR-G 127
            VKG E  + +++V+ D+E+ +   ++ +TI+IE FVP D I +++LE+P+Y+ P +  G
Sbjct: 64  EVKGYERGENDFLVIEDEELESVALESARTIDIEKFVPRDTIEWIWLEKPHYLTPSDEVG 123

Query: 128 AKVYALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGPGLVLNLLRWGADIRP----WTD 183
            + ++++R+ +      G++R+VI  ++   +L P G G+V+  LR+G ++R     + D
Sbjct: 124 HEAFSVIRDAMVAEKVAGISRLVIGRRERAVMLEPCGKGIVVWTLRYGDEVRKPENYFAD 183

Query: 184 LPLPSEDAKKAGLSERELKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQTET 243
           +     D K        + +   L+++ S  W+P+   D  ++++L +++ K K+   + 
Sbjct: 184 IGDGDNDPKL-------MSLVTSLIEERSKPWNPNMVSDPVQEKLLEIIESKRKS--AKK 234

Query: 244 VTQPEPEESQSTEGRGAKIIDLTELLQRSLRGK--GGK 279
           V +P+ +E +        +IDL   L+ SL  K  GGK
Sbjct: 235 VAKPKAKEGEPV--HAGNVIDLMAALKGSLEKKKPGGK 270