Pairwise Alignments

Query, 323 a.a., Ku domain protein from Variovorax sp. SCN45

Subject, 294 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  134 bits (337), Expect = 3e-36
 Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 26/318 (8%)

Query: 7   APAPRVLWKGAISFGLVHIPVALYSAT-TDHGIDFDWLDKRTMDPVGYKRINKKTGKEIA 65
           A + R  WKG + FG V  PVALY+AT T   I F  +++ T + V  + I+  +GK + 
Sbjct: 2   AVSARAQWKGYLRFGEVTAPVALYTATSTSDRIAFHTVNRETGNRVRREFIDSVSGKPVE 61

Query: 66  REQIVKGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPIN 125
           +E  VKG E  D  YVVL  +E+A+A P++ +T+ ++ F+P D +  VY ++PYY+ P  
Sbjct: 62  KEDQVKGYEIGDERYVVLEPEEVASAVPESDKTLRVQAFIPCDEVEKVYFDKPYYLTPDK 121

Query: 126 RGAKVYALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGPGLVLNLLRWGADIRPWTDLP 185
            G   +ALLRE +++     +A+ V+  +    +L P   GL+   L +  ++R   +  
Sbjct: 122 MGTDAFALLREGMRKKKVAAIAQTVLFRRMRTILLRPHDKGLIATTLNFDYEVRSAKEAF 181

Query: 186 LPSEDAKKAGLSERELKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQTETVT 245
               D K  G     L +AK ++      +  +EF D ++  +  L+  K++        
Sbjct: 182 KEIPDIKIEG---EMLDLAKHIIGMKKGTFSAEEFDDRYEAALADLIKAKLEGKSLPKRA 238

Query: 246 QPEPEESQSTEGRGAKIIDLTELLQRSLRGKGGKTAKAAAADEEDEEDEAPPPKAAAKKR 305
            P          + +K  DL E L++S   K    A    A +E          AA  K 
Sbjct: 239 PP----------KVSKANDLLEALRQSAGMKKPPAASKKRAGKE---------SAAKTKA 279

Query: 306 KPAAKAARKAPVRHRKAA 323
           K AAK+   AP + R+A+
Sbjct: 280 KTAAKS---APAQRRRAS 294