Pairwise Alignments

Query, 323 a.a., Ku domain protein from Variovorax sp. SCN45

Subject, 294 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score =  146 bits (368), Expect = 7e-40
 Identities = 96/314 (30%), Positives = 167/314 (53%), Gaps = 31/314 (9%)

Query: 9   APRVLWKGAISFGLVHIPVALYSATT-DHGIDFDWLDKRTMDPVGYKRINKKTGKEIARE 67
           APR  WKG I   LV  PV LY AT+    I F+ L K T + +  K ++ + G  + R 
Sbjct: 2   APRASWKGYIRLSLVSCPVRLYPATSASERISFNQLHKDTHNRINMKPVDPELGL-VERS 60

Query: 68  QIVKGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPINRG 127
            +VKG EYED +Y+++ D ++ +   ++  T+ IE FV A  +  +Y + PYY+AP    
Sbjct: 61  DLVKGYEYEDKKYIIIEDSDLESVRIESNHTMNIEAFVDAGSVDVIYQDAPYYLAPDGAM 120

Query: 128 A-KVYALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGPGLVLNLLRWGADIRPWTD--- 183
           A + + +LRE L+RSG++ +AR+V+ +++ +  + P   G+ +  LR   ++R   D   
Sbjct: 121 AEETFVVLREALRRSGKLAIARLVLSSRERVVTIGPRETGMFVCTLRNPNEVRGTADYFG 180

Query: 184 -LPLPSEDAKKAGLSERELKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQTE 242
            +P+   D +        L++A+ L++  +T +DP +++D ++  +++++ +K+K  +  
Sbjct: 181 NIPVGKPDPEM-------LQLAEALIEQKTTTFDPKQYEDRYEVALMQMIREKLKGHKPI 233

Query: 243 TVTQPEPEESQSTEGRGAKIIDLTELLQRSLRGKGGKTAKAAAADEEDEEDEA--PPPKA 300
               PE         RG  +++L + L+ SL       AK  A  +   E  A  P  KA
Sbjct: 234 IAQAPE---------RG-NVVNLMDALKASL-----SQAKPPARSKPKAEPAAKEPAAKA 278

Query: 301 AAKKRKPAAKAARK 314
           AA KR  A  AA+K
Sbjct: 279 AAAKRVTAKPAAKK 292