Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 346 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score =  187 bits (476), Expect = 7e-52
 Identities = 124/327 (37%), Positives = 170/327 (51%), Gaps = 20/327 (6%)

Query: 199 AKKMPAKAPAKVQAKAPKKVALPATLQPQLATLAASPPASPGDWLYELKFDGYRLLARID 258
           AK  PA+     Q   P    +   ++P LA L   PP  P DW++E+K+DGYRL   I+
Sbjct: 15  AKSKPARPRDPAQPNLPFD-PMAERIEPCLALLKPVPPKGP-DWVFEVKWDGYRLAIHIE 72

Query: 259 KGKVRCFTRNGHDWTAKLPALAEALAKLSTGAAWLDGEITVEGENGAPDFQALQNAF--- 315
              VR  TR GHDWT + PA+AEA +KL  G A LDGE  V  E G  DF ALQ +    
Sbjct: 73  PKGVRIITRGGHDWTHRFPAIAEATSKLGVGTAILDGEAVVLDEEGRSDFGALQRSLGGR 132

Query: 316 -DRGATSAIVYWLFDAPFLDGEDLRELPVEERRARLAKLLGKKPPAPLRLSEAF-DAAPR 373
             + +++  V++ FD  + DG DL    +  RR  L   L     A     E F D A  
Sbjct: 133 GGKRSSTESVFFAFDLLYFDGHDLSGTELSVRRHLLEGFLDGPTGAIQSSEEVFGDGA-- 190

Query: 374 DLLASSARIGFEGIVCKRKGSPYVPRRSPDWIKLKNQQRQEFVIGGYTAPKGARAGFGAL 433
            LL  +  +G +GI+ K +  PY   R+ DW+K+K  Q + F+I GY     AR G G+L
Sbjct: 191 -LLEKACSMGLKGIIAKHRDWPYRSGRTGDWLKIKCLQSESFMIVGYEQSLTARGGLGSL 249

Query: 434 LLG---VHDEATGRLRYCGNVGTGFDAKRLADIKARLDRLATDDCPFSPQPRGVKAQWVK 490
           LL     HD       Y G+VGTGF+ K    ++  LDRL T   P  P  +G    + +
Sbjct: 250 LLAGRKGHDWI-----YVGSVGTGFNTKDAEYLRKTLDRLKTSK-PAVPL-KGKNLVFAQ 302

Query: 491 PSLVAEVSFGEWTREDRVRQAVFQGLR 517
           P+L+AE+ F  WT +  +R A ++GLR
Sbjct: 303 PTLIAEIEFRGWTHDGSLRHASYKGLR 329