Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 285 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  109 bits (272), Expect = 2e-28
 Identities = 68/176 (38%), Positives = 90/176 (51%), Gaps = 5/176 (2%)

Query: 674 FDLDPGEGVAWPRIQEAAMLVRTLLDELGLPSFLKTSGGKGLHVVVPL----RRQYDWDA 729
           FDLDPG  V +  +  AA  +R  LDELGL SF KT+GGKGLHVV P     R+   W  
Sbjct: 109 FDLDPGPDVPFATVVAAAREMRDRLDELGLVSFCKTTGGKGLHVVTPFAVNKRKPLSWAE 168

Query: 730 VKGFSQAVVAHLAETIPSRFVAKSGPRNRVGKVFVDYLRNGFGATTVSAWSARSRPGLGV 789
            KGF+  V   +A   P  ++ K     R G++F+DYLRN   AT V+  S R+RPG  V
Sbjct: 169 AKGFAHDVCEQMARDNPDLYLIKMSKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATV 228

Query: 790 SVPLAWEELPVVTAADQWNVGNAAERFAIGNKPWAAMERSRKGLAAAMKLLGYSSK 845
           S+PL W ++       ++ V       A     W       + L  A+K LG S +
Sbjct: 229 SMPLNWTQVKSDLYPKRFTVRTVPALLA-KTTAWQDYCDGERPLEQAIKRLGKSRR 283



 Score = 68.9 bits (167), Expect = 4e-16
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 489 VKPSLVAEVSFGEWTREDRVRQAVFQGLRADKPARDIRRERPKEAGEIEADASSPA---- 544
           +KP LVAE+ F  WT +  VRQA F+GLR DKPA++++ E+P    + +     P+    
Sbjct: 1   MKPELVAEIEFAGWTADGLVRQAAFKGLREDKPAKEVQAEKPSPPAKTDTPEPGPSAKTR 60

Query: 545 ---KKKGKPAPMAQKITHADRVIDKHSG----ITKGQLAAYYDSVATL 585
              +K  K   M   I+  D+ +   +G    +TK  LA Y+++V TL
Sbjct: 61  PVRRKGAKAEVMGVLISSPDKPLWPDAGDGEPVTKEDLARYHEAVGTL 108