Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 636 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score =  306 bits (784), Expect = 2e-87
 Identities = 200/602 (33%), Positives = 301/602 (50%), Gaps = 26/602 (4%)

Query: 219 ALPATLQPQLATLAASPPASPGDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTAKLPA 278
           A PA ++P   TL   PP    DW++E+K DGYR    I+ GK+  +TR G DWT +  A
Sbjct: 54  AFPAFIEPCHPTLKKRPPDG-ADWVHEIKLDGYRAQLHINGGKITLYTRTGLDWTTEFEA 112

Query: 279 LAEALAKLSTGAAWLDGEITVEGENGAPDFQALQNAFDRGATSAIVYWLFDAPFLDGEDL 338
           +A A   L+     +DGE+TV G+ G PDFQAL+    + ++  + +  FD   LDG DL
Sbjct: 113 IATAAEDLAGHDVVMDGEVTVFGKTGLPDFQALRRELAKRSSPNLTFQAFDLLHLDGYDL 172

Query: 339 RELPVEERRARLAKLLGKKPPAPLRLSEAFDAAPRDLLASSARIGFEGIVCKRKGSPYVP 398
           R +P+ ER+  L +L+G        +          +   + ++G EGIV KRK +PY  
Sbjct: 173 RRVPLIERKRVLRELIGDAAGTIAYVDYLELEEGEPVYRHACKMGLEGIVSKRKDAPYRS 232

Query: 399 RRSPDWIKLKNQQRQEFVIGGYTAPKGARAG-FGALLLGVHDEATGRLRYCGNVGTGFDA 457
            R   W K K  +R  F I  +    GA+     +L LG  +    RL Y G   TG+  
Sbjct: 233 GRQEIWTKTKCTKRDAFPIVAFVEKLGAQPRRIASLYLGRWEG--DRLVYAGKAQTGYTL 290

Query: 458 KRLADIKARLDRLATDDCPFSPQPRGVKAQWVKPSLVAEVSFGEWTREDRVRQAVFQGLR 517
               +++ RL+ L     P S      KA WV+P + AE+ +G  T +  +R+ VF+GL+
Sbjct: 291 TAAREVRERLNPLIIGKSPLSHPINKPKATWVEPQVYAEIDYGGVTDDGLLREPVFKGLQ 350

Query: 518 ADKPARDIRRERPKEAGEIEADASSPAKKKGKPAPMAQKITHADRVIDKHSGITKGQLAA 577
                 D+ R   K         ++PA  +  PA + Q +  A  V+      +K +LA 
Sbjct: 351 ------DVSRAAGKPK-----PTTAPASIRVPPANILQLLPEA--VVP-----SKEELAN 392

Query: 578 YYDSVATLMLPHLRGRPVSLVRAPEGVGGELFFQKHVQNREIPGVRLLD-PALDPGHEPL 636
           Y+  VA   L  L GRP+ LVR    + G  F+ K       P V  L     + G    
Sbjct: 393 YWTRVADRALHFLGGRPLKLVRH---IHGTTFYHKGPLPPIPPEVHQLRIEKREGGAGVR 449

Query: 637 LQIDTRTGLLGAAQMNVIELHTWNATSRAIGKPDRMTFDLDPGEGVAWPRIQEAAMLVRT 696
           L +D   GLLG  ++  +ELH W A+   I   D + FDLDPGEGV+W  + E A+ +R 
Sbjct: 450 LWVDDLAGLLGLVEIGAVELHPWAASVDDIEHADALIFDLDPGEGVSWAFVVETALRLRE 509

Query: 697 LLDELGLPSFLKTSGGKGLHVVVPLRRQYDWDAVKGFSQAVVAHLAETIPSRFVAKSGPR 756
            L+  G  ++ K +GGKG+H++ PL  +   +A   +++ +    A T P R+V  +   
Sbjct: 510 FLEAEGFKTWPKLTGGKGVHLMSPLPAKMTHNAAHAYAKRLAQQFASTDPDRYVTSAQLS 569

Query: 757 NRVGKVFVDYLRNGFGATTVSAWSARSRPGLGVSVPLAWEELPVVTAADQWNVGNAAERF 816
            R GK+F+DYLRNG G T V  +S R+R G  V+ P+ W ++      D + +G   +R 
Sbjct: 570 RRPGKLFLDYLRNGRGTTAVGTYSPRARSGFPVAAPVTWRDIERGIKPDAFTIGRPPKRR 629

Query: 817 AI 818
           A+
Sbjct: 630 AV 631